View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0813_high_6 (Length: 436)
Name: NF0813_high_6
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0813_high_6 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0369 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 97 - 436
Target Start/End: Complemental strand, 17388755 - 17388416
Alignment:
| Q |
97 |
tctagacatcctgcccaatcagcatcagaatatccaagtacttgtaattctgattgcctatcaaagaagataccttgacctggattatttttgaggtacc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17388755 |
tctagacatcctgcccaatcagcatcagaatatccaagtacttgtaattttgattgcctatcaaagaagataccttgacctggattatttttgaggtacc |
17388656 |
T |
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| Q |
197 |
ttatgactctacaagctgcatgatagtgtgtcacggtaggtgagtgaaggaactggcttaattgttgtgttgcaaatgtaatatcagggcgtgtggtatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17388655 |
ttatgactctacaagctgcatgatagtgtgtcacagtaggtgagtgaaggaactgacttaattgttgtgttgcaaatgtaatatcagggcgtgtggtatt |
17388556 |
T |
|
| Q |
297 |
tagatacaaaagctttccaattagtcttctataagatgaaatatcttcataaggctttcccaagtcattatgaagcttaattgaagtatcaagtggtgtg |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
17388555 |
tagatacaaaagctttccaattagtcttctataagatgaaatatcttcataaggctttcctaagtcattatgcagcttaattgaagtatcaagtggtgtg |
17388456 |
T |
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| Q |
397 |
gaagcaggctttgcaccaagtagtcctgaatctctcaata |
436 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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| T |
17388455 |
gaagcgggctttgcaccaagtagtcctgaatctctcaata |
17388416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: scaffold0369
Description:
Target: scaffold0369; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 123 - 436
Target Start/End: Original strand, 14846 - 15159
Alignment:
| Q |
123 |
agaatatccaagtacttgtaattctgattgcctatcaaagaagataccttgacctggattatttttgaggtaccttatgactctacaagctgcatgatag |
222 |
Q |
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| T |
14846 |
agaatatccaagtacttgtaattctgattgcctatcaaagaagataccttgacctggattatttttgaggtaccttatgactctacaagctgcatgatag |
14945 |
T |
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| Q |
223 |
tgtgtcacggtaggtgagtgaaggaactggcttaattgttgtgttgcaaatgtaatatcagggcgtgtggtatttagatacaaaagctttccaattagtc |
322 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14946 |
tgtgtcacagtaggtgagtgaaggaactgacttaattgttgtgttgcaaatataatatcagggcgtgtggtatttagatacaaaagctttccaattagtc |
15045 |
T |
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| Q |
323 |
ttctataagatgaaatatcttcataaggctttcccaagtcattatgaagcttaattgaagtatcaagtggtgtggaagcaggctttgcaccaagtagtcc |
422 |
Q |
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| T |
15046 |
ttctataagatgaaatatcttcataaggctttcgtaagtcattatgcagcttaattgaagaatcaagtggtgtggaagtaggctttgcaccaagtagtcc |
15145 |
T |
|
| Q |
423 |
tgaatctctcaata |
436 |
Q |
| |
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|||||||||||||| |
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| T |
15146 |
tgaatctctcaata |
15159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0369; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 132
Target Start/End: Original strand, 14339 - 14374
Alignment:
| Q |
97 |
tctagacatcctgcccaatcagcatcagaatatcca |
132 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
14339 |
tctagacatcctgcccaatcagcatcagaatatcca |
14374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 97 - 314
Target Start/End: Complemental strand, 15537883 - 15537666
Alignment:
| Q |
97 |
tctagacatcctgcccaatcagcatcagaatatccaagtacttgtaattctgattgcctatcaaagaagataccttgacctggattatttttgaggtacc |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15537883 |
tctagacatcctgcccaatcagcatcagaatatccaagtacttgtaattctgattgcctatcaaagaagataccttgacctggattatttttgaggtacc |
15537784 |
T |
|
| Q |
197 |
ttatgactctacaagctgcatgatagtgtgtcacggtaggtgagtgaaggaactggcttaattgttgtgttgcaaatgtaatatcagggcgtgtggtatt |
296 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15537783 |
ttatgactctacaagctgcatgatagtgtgtcacagtaggtgagtgaaggaactaacttaattgttgtgttgcaaatgtaatatcagggcgtgtggtatt |
15537684 |
T |
|
| Q |
297 |
tagatacaaaagctttcc |
314 |
Q |
| |
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|||||||||||||||||| |
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| T |
15537683 |
tagatacaaaagctttcc |
15537666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 3005207 - 3005115
Alignment:
| Q |
256 |
aattgttgtgttgcaaatgtaatatcagggcgtgtggtatttagatacaaaagctttccaattagtcttctataagatgaaatatcttcataa |
348 |
Q |
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|||||||||||| ||| ||||||||||| | ||| || || |||||||| || | ||||| | ||| |||||||| ||||||||||||||| |
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| T |
3005207 |
aattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaatatcttcataa |
3005115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 348
Target Start/End: Complemental strand, 23682524 - 23682432
Alignment:
| Q |
256 |
aattgttgtgttgcaaatgtaatatcagggcgtgtggtatttagatacaaaagctttccaattagtcttctataagatgaaatatcttcataa |
348 |
Q |
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|||||||||||| ||| ||||||||||| | ||| || || |||||||| || | ||||| | ||| |||||||| ||||||||||||||| |
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| T |
23682524 |
aattgttgtgttataaaggtaatatcaggtcttgttgtgttcagatacaatagtctaccaatcaatctcctataagaagaaatatcttcataa |
23682432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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