View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_10 (Length: 356)

Name: NF0813_low_10
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_10
NF0813_low_10
[»] chr8 (2 HSPs)
chr8 (98-320)||(17826093-17826310)
chr8 (1-34)||(17826374-17826407)
[»] chr5 (6 HSPs)
chr5 (94-148)||(23921151-23921205)
chr5 (103-149)||(12590915-12590961)
chr5 (1-34)||(23921265-23921298)
chr5 (109-149)||(13600069-13600109)
chr5 (250-317)||(35823267-35823334)
chr5 (103-141)||(12590769-12590807)
[»] chr4 (6 HSPs)
chr4 (250-317)||(47442687-47442754)
chr4 (103-149)||(577003-577049)
chr4 (103-149)||(17736452-17736498)
chr4 (103-149)||(35710443-35710489)
chr4 (103-149)||(35714751-35714797)
chr4 (103-141)||(35714606-35714644)
[»] chr7 (4 HSPs)
chr7 (103-149)||(3793077-3793123)
chr7 (109-149)||(29682564-29682604)
chr7 (254-307)||(8145602-8145655)
chr7 (279-317)||(25171841-25171879)
[»] chr3 (3 HSPs)
chr3 (103-149)||(22475241-22475287)
chr3 (103-149)||(11953980-11954026)
chr3 (103-141)||(22475393-22475431)
[»] chr2 (2 HSPs)
chr2 (103-149)||(9919371-9919417)
chr2 (103-141)||(9919226-9919264)
[»] chr1 (3 HSPs)
chr1 (103-149)||(29843325-29843371)
chr1 (103-149)||(42679971-42680017)
chr1 (103-141)||(42680125-42680163)
[»] scaffold0012 (1 HSPs)
scaffold0012 (253-307)||(178088-178142)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 98 - 320
Target Start/End: Complemental strand, 17826310 - 17826093
Alignment:
Q  98 ctatctataatattttgaggtagcaatcctttgctgcacctcttttttggtttnnnnnnnnnnnnngtcttagatgtctcaccaaagataannnnnnnnn 197  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||              |||||  |||||||| |||||||||             
T  17826310 ctatctataatattttgaggtagcagtcctttgctgcacctcttttttggtt----aaaaataaaagtcttgaatgtctcaacaaagataa--ttttttt 17826217  T
Q  198 ngttttagttacataacaaagatttctta-nnnnnnnnaaagagttgtcgtcaaacaaagattaaatgaattgaatttattgtcaattgaaaaataaatg 296  Q
     ||||| ||||||| ||||||||||||||         ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17826216 tgttttcgttacatgacaaagatttcttatttgtttttaaagaattgtcttcaaacaaagattaaatgaattgaatttattgtcaattgaaaaataaatg 17826117  T
Q  297 ttaaatgaaatcaattatgatgat 320  Q
    ||||||||||||||||||||||||    
T  17826116 ttaaatgaaatcaattatgatgat 17826093  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17826407 - 17826374
Alignment:
Q  1 gcttttatggtcaagatagacttgggttacccaa 34  Q
    |||||||| |||||||||||||||||||||||||    
T  17826407 gcttttatcgtcaagatagacttgggttacccaa 17826374  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 94 - 148
Target Start/End: Complemental strand, 23921205 - 23921151
Alignment:
Q  94 ctctctatctataatattttgaggtagcaatcctttgctgcacctcttttttggt 148  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  23921205 ctctctatctataatattttgaggtagcagtcctttgctgcacctcctttttggt 23921151  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 12590961 - 12590915
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  12590961 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 12590915  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23921298 - 23921265
Alignment:
Q  1 gcttttatggtcaagatagacttgggttacccaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  23921298 gcttttatggtcaagatagacttgggttacccaa 23921265  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 13600109 - 13600069
Alignment:
Q  109 attttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  13600109 attttgaggtagcagtcctctgctgcacctcttttttggtt 13600069  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 35823267 - 35823334
Alignment:
Q  250 aacaaagattaaatgaattgaatttattgtcaattgaaaaataaatgttaaatgaaatcaattatgat 317  Q
    |||||||||||||| |||||  |||||| || || |||||||||||||||||| ||||  ||||||||    
T  35823267 aacaaagattaaatcaattgtctttattatcgatagaaaaataaatgttaaataaaattgattatgat 35823334  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 12590807 - 12590769
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctctt 141  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  12590807 tataaaattttgaggtagcactcctttgctgcacctctt 12590769  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 317
Target Start/End: Complemental strand, 47442754 - 47442687
Alignment:
Q  250 aacaaagattaaatgaattgaatttattgtcaattgaaaaataaatgttaaatgaaatcaattatgat 317  Q
    ||||||||| ||||||||||  ||||||||||||||||||||||||||| ||||||||  ||||||||    
T  47442754 aacaaagatgaaatgaattgtctttattgtcaattgaaaaataaatgttcaatgaaattgattatgat 47442687  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 577049 - 577003
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  577049 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 577003  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 17736452 - 17736498
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  17736452 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 17736498  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 35710489 - 35710443
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35710489 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 35710443  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 35714797 - 35714751
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  35714797 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 35714751  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 35714644 - 35714606
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctctt 141  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  35714644 tataaaattttgaggtagcactcctttgctgcacctctt 35714606  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 3793077 - 3793123
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  3793077 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 3793123  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 29682604 - 29682564
Alignment:
Q  109 attttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  29682604 attttgaggtagcagtcctttgctgcacctcttttttggtt 29682564  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 8145655 - 8145602
Alignment:
Q  254 aagattaaatgaattgaatttattgtcaattgaaaaataaatgttaaatgaaat 307  Q
    ||||||||||||||||  |||| |||| |||||||||||||| |||||||||||    
T  8145655 aagattaaatgaattgtctttagtgtcgattgaaaaataaatattaaatgaaat 8145602  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 25171841 - 25171879
Alignment:
Q  279 tcaattgaaaaataaatgttaaatgaaatcaattatgat 317  Q
    |||||||||||| ||||||||||||||||| ||||||||    
T  25171841 tcaattgaaaaagaaatgttaaatgaaatccattatgat 25171879  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 22475241 - 22475287
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  22475241 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 22475287  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 11954026 - 11953980
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||| | ||||||||||||||||||||||||||    
T  11954026 tataaaattttgaggtaggagtcctttgctgcacctcttttttggtt 11953980  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 22475393 - 22475431
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctctt 141  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  22475393 tataaaattttgaggtagcactcctttgctgcacctctt 22475431  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 9919417 - 9919371
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  9919417 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 9919371  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Complemental strand, 9919264 - 9919226
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctctt 141  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  9919264 tataaaattttgaggtagcactcctttgctgcacctctt 9919226  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Complemental strand, 29843371 - 29843325
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  29843371 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 29843325  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 103 - 149
Target Start/End: Original strand, 42679971 - 42680017
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctcttttttggtt 149  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||    
T  42679971 tataaaattttgaggtagcagtcctttgctgcacctcttttttggtt 42680017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 42680125 - 42680163
Alignment:
Q  103 tataatattttgaggtagcaatcctttgctgcacctctt 141  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  42680125 tataaaattttgaggtagcactcctttgctgcacctctt 42680163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 307
Target Start/End: Original strand, 178088 - 178142
Alignment:
Q  253 aaagattaaatgaattgaatttattgtcaattgaaaaataaatgttaaatgaaat 307  Q
    |||||||||||  ||||| ||||||||||||| |||||||||| |||||| ||||    
T  178088 aaagattaaattgattgactttattgtcaattaaaaaataaatattaaataaaat 178142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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