View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0813_low_11 (Length: 353)
Name: NF0813_low_11
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0813_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 43497993 - 43498183
Alignment:
| Q |
19 |
ccaccatcaatttcaacccaagaaaacaaccttcaatccaatgttcttcacgcaaccccccacttgacacaacaaccaaaaactcggtaagaaggttttc |
118 |
Q |
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| T |
43497993 |
ccaccatcaatttcaacccaagaaaacaaccttcaatccaatgttcttcacgcaaccccccacttgacacagcaaccaaaaactcggtaagaaggttttc |
43498092 |
T |
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| Q |
119 |
caagaaagcctcttcttcttcttcatctcatactgacaaaaaggtttcctttgaatcaaaatcagttaacagtaccagttacactgttgtt |
209 |
Q |
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| T |
43498093 |
caagaaaacctcttcttcttcttcatctcatactgacaaaaaggtttcctttgaatcaaaatcagttaacagtaccagttacactgttgtt |
43498183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 284 - 353
Target Start/End: Original strand, 43498258 - 43498327
Alignment:
| Q |
284 |
acaagctaaattgcgggtttctttggatcagtgttctaaaagaggggatttaaagggagctttatcctta |
353 |
Q |
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| T |
43498258 |
acaagctaaattgcgggtttctttggatcagtgttctaaaagaggggatttaaagggagcttgatcctta |
43498327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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