View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_13 (Length: 300)

Name: NF0813_low_13
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_13
NF0813_low_13
[»] chr5 (5 HSPs)
chr5 (35-300)||(17387784-17388049)
chr5 (75-287)||(26465723-26465935)
chr5 (75-266)||(9845913-9846104)
chr5 (228-283)||(23958431-23958486)
chr5 (216-266)||(11925620-11925670)
[»] chr8 (6 HSPs)
chr8 (44-280)||(20077580-20077816)
chr8 (44-287)||(44288742-44288985)
chr8 (73-282)||(25574806-25575015)
chr8 (141-262)||(2997639-2997760)
chr8 (230-266)||(12461803-12461839)
chr8 (223-287)||(19800057-19800121)
[»] chr2 (7 HSPs)
chr2 (74-282)||(26360449-26360657)
chr2 (73-282)||(18498778-18498987)
chr2 (141-300)||(30154766-30154925)
chr2 (228-295)||(34978790-34978857)
chr2 (226-283)||(20041756-20041813)
chr2 (228-280)||(13131885-13131937)
chr2 (230-266)||(40091446-40091482)
[»] scaffold0779 (1 HSPs)
scaffold0779 (73-282)||(4901-5110)
[»] chr4 (4 HSPs)
chr4 (224-280)||(19803288-19803344)
chr4 (45-190)||(13988964-13989109)
chr4 (224-280)||(8122123-8122179)
chr4 (225-280)||(14040099-14040154)
[»] chr3 (7 HSPs)
chr3 (141-300)||(18433105-18433264)
chr3 (45-190)||(31194154-31194299)
chr3 (45-190)||(52774014-52774159)
chr3 (44-120)||(50059872-50059948)
chr3 (216-283)||(10544360-10544427)
chr3 (223-287)||(12297686-12297750)
chr3 (223-287)||(19585641-19585705)
[»] scaffold0014 (1 HSPs)
scaffold0014 (45-190)||(94808-94953)
[»] chr1 (5 HSPs)
chr1 (75-142)||(6531821-6531888)
chr1 (218-268)||(9796043-9796093)
chr1 (223-287)||(52778966-52779030)
chr1 (225-288)||(47803917-47803980)
chr1 (230-266)||(8190678-8190714)
[»] chr6 (3 HSPs)
chr6 (141-190)||(26134522-26134571)
chr6 (216-262)||(21752805-21752851)
chr6 (216-262)||(33580683-33580729)
[»] scaffold0329 (1 HSPs)
scaffold0329 (223-287)||(12295-12359)
[»] chr7 (4 HSPs)
chr7 (141-190)||(16257600-16257649)
chr7 (225-266)||(19606707-19606748)
chr7 (225-266)||(37012368-37012409)
chr7 (230-266)||(4245006-4245042)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 35 - 300
Target Start/End: Original strand, 17387784 - 17388049
Alignment:
Q  35 cataggcaacaaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagag 134  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  17387784 cataggcaacaaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccagattggttgcaaaaggatacaaccaaatagag 17387883  T
Q  135 ggtttggatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaat 234  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17387884 ggtttggatttctttgacaccttttcaccaatggccaaacttactactgtcagaacactactagctctatctgccataaataactggaatttacatcaat 17387983  T
Q  235 tagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17387984 tagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaag 17388049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 75 - 287
Target Start/End: Complemental strand, 26465935 - 26465723
Alignment:
Q  75 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaac 174  Q
    ||||| || |||||||| ||||| || | | | |||||||| || ||||||||||| |||||||||||||  ||||| || | ||||||||| || ||||    
T  26465935 gatggctcaattgaaagatacaaagcaagacttgttgcaaagggttacaaccaaattgagggtttggattattttgatacatattcaccagttgctaaac 26465836  T
Q  175 ttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaaga 274  Q
    | || |||||||||||  |  ||||| ||||    || ||||||||| |  | |||||||| ||||| || ||||| ||||| ||||| || ||||||||    
T  26465835 tcacaactgtcagaaccattatagctttagcatatatgaataactggcacattcatcaattggatgtcaataatgcatttttgcatggtgacctccaaga 26465736  T
Q  275 agatgtatatatg 287  Q
    |||||| ||||||    
T  26465735 agatgtgtatatg 26465723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 75 - 266
Target Start/End: Complemental strand, 9846104 - 9845913
Alignment:
Q  75 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaac 174  Q
    |||||||| |||||||| | ||| || | |||||||||||| || || |||||||| || || |||||||  ||||| |||| |||||| || || ||||    
T  9846104 gatggatctattgaaagattcaaagctagattagttgcaaagggttataaccaaattgaaggcttggattattttgatacctattcacctgtagctaaac 9846005  T
Q  175 ttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagat 266  Q
    | || ||  |||||  | |  | ||||||||| |||| ||||| ||| || ||||||||||||||||||| ||||||||| | |||||||||    
T  9846004 taaccacaatcagattaattttggctctagcttccatcaataattggcatctacatcaattagatgtaaataatgcctttctgcatggagat 9845913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 23958431 - 23958486
Alignment:
Q  228 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtata 283  Q
    |||||||||||||| || ||| ||||||| || |||||||||||||||||||||||    
T  23958431 catcaattagatgttaataattcctttttgcagggagatctccaagaagatgtata 23958486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 11925620 - 11925670
Alignment:
Q  216 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagat 266  Q
    |||||| ||||||||||| | ||||||||||||||| || |||||||||||    
T  11925620 aactggtatttacatcaacttgatgtaaacaatgccattctacatggagat 11925670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 44 - 280
Target Start/End: Original strand, 20077580 - 20077816
Alignment:
Q  44 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggat 143  Q
    ||||||||| |||| | | || |||||| | ||||| || |||||||||||||| |||| | | || |||||||| ||||| ||||| ||||| ||||||    
T  20077580 caaatgggtgtatagagtgaaacataaggcagatggctctattgaaaggtacaaagccagactggtagcaaaaggttacaatcaaattgagggcttggat 20077679  T
Q  144 ttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaa 243  Q
    || |||||||||||||| || || |||||||| || || || ||||| || |||||| | ||| || | ||  ||||| |||||||||| ||||||||||    
T  20077680 ttttttgacaccttttctcctgttgccaaactcacaacagttagaactcttctagctattgcttccctcaaacactggcatttacatcagttagatgtaa 20077779  T
Q  244 acaatgcctttttacatggagatctccaagaagatgt 280  Q
    ||||||| ||| | |||| |||| | || ||||||||    
T  20077780 acaatgcatttcttcatgaagatttgcaggaagatgt 20077816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 44 - 287
Target Start/End: Complemental strand, 44288985 - 44288742
Alignment:
Q  44 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggat 143  Q
    |||||||||||| ||| | ||||| ||  ||||||| ||  ||||||| |  || |||| ||||||||||||||| ||||| ||| | ||||| || |||    
T  44288985 caaatgggtatacaaagttaagcacaaagctgatggctcagttgaaagatttaaagccagattagttgcaaaaggctacaatcaagttgagggcttagat 44288886  T
Q  144 ttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaa 243  Q
    |  |||||||| ||||||||  |||| ||||| |||||||| ||||   |||| ||| ||||| | || ||| | ||| |||| ||||| ||||||||||    
T  44288885 tattttgacacattttcacctatggcgaaactcactactgtaagaatggtacttgctttagcttcaattaatcattggcatttgcatcagttagatgtaa 44288786  T
Q  244 acaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    | ||||| ||||| ||||| |||||| |||| ||||| ||||||    
T  44288785 ataatgcatttttgcatggggatctcgaagaggatgtctatatg 44288742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 282
Target Start/End: Complemental strand, 25575015 - 25574806
Alignment:
Q  73 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 172  Q
    ||||||| || ||||||||||||||||||| | ||||||| ||||| ||||| || || |||||| ||||||||||| |||| || || || || || ||    
T  25575015 ctgatggctctattgaaaggtacaaggccagactagttgctaaagggtacaatcagattgagggtctggatttctttaacactttctctcctgttgctaa 25574916  T
Q  173 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 272  Q
     || || ||||| ||||| || |||| | | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | |||    
T  25574915 gctcacaactgttagaactcttctaggtgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaa 25574816  T
Q  273 gaagatgtat 282  Q
    ||||||||||    
T  25574815 gaagatgtat 25574806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 262
Target Start/End: Original strand, 2997639 - 2997760
Alignment:
Q  141 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 240  Q
    ||||| ||||| || ||||||||||| ||||| ||||| || || ||||   |||| ||  ||||| | ||||| |||||| |||||||||| || ||||    
T  2997639 gatttttttgatactttttcaccagtagccaagcttaccacagtaagaattttacttgccatagcttcaataaaaaactggcatttacatcagttggatg 2997738  T
Q  241 taaacaatgcctttttacatgg 262  Q
    |||||||||| ||| |||||||    
T  2997739 taaacaatgcttttctacatgg 2997760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 12461803 - 12461839
Alignment:
Q  230 tcaattagatgtaaacaatgcctttttacatggagat 266  Q
    |||||| |||||||| |||||||||||||||||||||    
T  12461803 tcaatttgatgtaaaaaatgcctttttacatggagat 12461839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 19800121 - 19800057
Alignment:
Q  223 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    |||||||||| || |||||||||||||| ||||  |||||||||||  || | ||||||||||||    
T  19800121 atttacatcagttggatgtaaacaatgcattttcgcatggagatctttaataggatgtatatatg 19800057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 282
Target Start/End: Complemental strand, 26360657 - 26360449
Alignment:
Q  74 tgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaaa 173  Q
    |||||| || |||||||||||||| |||| | ||||||| ||||| ||||| || || |||||| |||||||||||||||| || || || || || ||     
T  26360657 tgatggctctattgaaaggtacaaagccagactagttgctaaagggtacaatcagattgagggtctggatttctttgacactttctctcctgttgctaag 26360558  T
Q  174 cttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaag 273  Q
    || || ||||| ||||| || |||||| | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | ||||    
T  26360557 ctcacaactgttagaactcttctagctgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaag 26360458  T
Q  274 aagatgtat 282  Q
    |||||||||    
T  26360457 aagatgtat 26360449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 73 - 282
Target Start/End: Complemental strand, 18498987 - 18498778
Alignment:
Q  73 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 172  Q
    ||||||| || |||||||||||||| |||| | ||||||| ||||| ||||| || || |||||| |||||||||||||||| || || || || || ||    
T  18498987 ctgatggctctattgaaaggtacaaagccagactagttgctaaagggtacaatcagattgagggtctggatttctttgacactttctctcctgttgctaa 18498888  T
Q  173 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 272  Q
     || || ||| | ||||| || |||||| | ||| | ||  |||| ||| ||||||||||| | ||||| || ||||| ||| | ||||||||| | |||    
T  18498887 gctcacaactattagaactcttctagctgttgcttctattcataattggcatttacatcaacttgatgtgaataatgcatttcttcatggagatttgcaa 18498788  T
Q  273 gaagatgtat 282  Q
    ||||||||||    
T  18498787 gaagatgtat 18498778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 141 - 300
Target Start/End: Original strand, 30154766 - 30154925
Alignment:
Q  141 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 240  Q
    ||||| ||||| ||||||||||| || || ||||| ||||| || |||||| |||| ||||| ||| | ||  ||   ||| ||||||||||||||||||    
T  30154766 gatttttttgataccttttcacctgttgcaaaactcactacagttagaacattacttgctcttgcttcaattcattcttggcatttacatcaattagatg 30154865  T
Q  241 taaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaag 300  Q
    |||| ||||| ||||| ||||||||  | |||||||| || |||||| | ||||||||||    
T  30154866 taaataatgcgtttttgcatggagaattacaagaagaagtttatatgactattccagaag 30154925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 295
Target Start/End: Complemental strand, 34978857 - 34978790
Alignment:
Q  228 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattcc 295  Q
    |||||||| |||||||||||||||||| | ||||||||||| || |||||||| || ||||| |||||    
T  34978857 catcaattggatgtaaacaatgcctttcttcatggagatcttcatgaagatgtttacatggccattcc 34978790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 283
Target Start/End: Complemental strand, 20041813 - 20041756
Alignment:
Q  226 tacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtata 283  Q
    ||||||| || ||||||||||| |||||||||||||| || || |||||||| |||||    
T  20041813 tacatcagttggatgtaaacaacgcctttttacatggtgacctacaagaagaagtata 20041756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 13131885 - 13131937
Alignment:
Q  228 catcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 280  Q
    ||||||||||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  13131885 catcaattagatgtaaataatgcatttttgcatggtgatcttcaagaaaatgt 13131937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 40091446 - 40091482
Alignment:
Q  230 tcaattagatgtaaacaatgcctttttacatggagat 266  Q
    |||||| |||||||| |||||||||||||||||||||    
T  40091446 tcaatttgatgtaaaaaatgcctttttacatggagat 40091482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0779 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0779
Description:

Target: scaffold0779; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 282
Target Start/End: Original strand, 4901 - 5110
Alignment:
Q  73 ctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatttctttgacaccttttcaccagtggccaa 172  Q
    ||||||| || |||||||||||||| |||| ||||||||| ||||| ||||| || || |||||| || |||| |||||||| || || || || || ||    
T  4901 ctgatggctctattgaaaggtacaaagccagattagttgctaaagggtacaatcagattgagggtctgaatttttttgacactttctctcctgttgctaa 5000  T
Q  173 acttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaa 272  Q
    ||| || ||| | ||||| || |||| | | ||| | ||  |||| ||||||||||||||| | ||||| || ||||  ||| | ||||||||| | |||    
T  5001 actcacaactattagaactcttctagttgttgcttctattcataattggaatttacatcaacttgatgtgaataatgaatttcttcatggagatttgcaa 5100  T
Q  273 gaagatgtat 282  Q
    ||||||||||    
T  5101 gaagatgtat 5110  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 19803344 - 19803288
Alignment:
Q  224 tttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 280  Q
    ||||||||||||||||||||||||||||||| | ||||| |||||||| ||||||||    
T  19803344 tttacatcaattagatgtaaacaatgcctttcttcatggtgatctccatgaagatgt 19803288  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 13988964 - 13989109
Alignment:
Q  45 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 144  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  13988964 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattgatt 13989063  T
Q  145 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  13989064 tttttgacactttttcaccagtagccaaaattactactgtcagaac 13989109  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 280
Target Start/End: Complemental strand, 8122179 - 8122123
Alignment:
Q  224 tttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 280  Q
    |||||||||||| |||||||||||||||||| | ||||||||||| || ||||||||    
T  8122179 tttacatcaattggatgtaaacaatgcctttcttcatggagatcttcatgaagatgt 8122123  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 14040099 - 14040154
Alignment:
Q  225 ttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgt 280  Q
    |||||||||||||||||||||||||| ||| | |||||||||||||| || |||||    
T  14040099 ttacatcaattagatgtaaacaatgcatttcttcatggagatctccatgaggatgt 14040154  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 300
Target Start/End: Complemental strand, 18433264 - 18433105
Alignment:
Q  141 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaacactactagctctagctgccataaataactggaatttacatcaattagatg 240  Q
    ||||| ||||| ||||||||||| || || ||||| ||||| || |||||| |||| ||||| ||| | ||  ||   ||| ||||||||||||||||||    
T  18433264 gatttttttgataccttttcacctgttgcaaaactcactacagttagaacattacttgctcttgcttcaattcattcttggcatttacatcaattagatg 18433165  T
Q  241 taaacaatgcctttttacatggagatctccaagaagatgtatatatggcaattccagaag 300  Q
    |||| ||||| ||||| ||||||||  | |||||||| || || ||| | ||||||||||    
T  18433164 taaataatgcgtttttgcatggagaattacaagaagaagtttacatgactattccagaag 18433105  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 31194299 - 31194154
Alignment:
Q  45 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 144  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  31194299 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattgatt 31194200  T
Q  145 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  31194199 tttttgacactttttcaccagtagccaaaattactactgtcagaac 31194154  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 52774014 - 52774159
Alignment:
Q  45 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 144  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  52774014 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggttataatcaagttgaaggtattgatt 52774113  T
Q  145 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  52774114 tttttgacactttttcaccagtagccaaaattactactgtcagaac 52774159  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 120
Target Start/End: Original strand, 50059872 - 50059948
Alignment:
Q  44 caaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggat 120  Q
    |||||||||||| || |||||  | ||| |||||||||| ||||||||||||||||| | ||| ||||| |||||||    
T  50059872 caaatgggtatacaatataaaatacaaggctgatggatctattgaaaggtacaaggcaagattggttgccaaaggat 50059948  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 10544360 - 10544427
Alignment:
Q  216 aactggaatttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtata 283  Q
    |||||| ||||| |||||||||||||||||||||| ||  | ||||||||| | |||||| |||||||    
T  10544360 aactggcatttatatcaattagatgtaaacaatgctttccttcatggagatttgcaagaaaatgtata 10544427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 12297686 - 12297750
Alignment:
Q  223 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    ||||||||||| | ||||||| |||||| ||| | ||||||||| | ||||||||||| ||||||    
T  12297686 atttacatcaacttgatgtaagcaatgcttttcttcatggagatttacaagaagatgtttatatg 12297750  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 287
Target Start/End: Complemental strand, 19585705 - 19585641
Alignment:
Q  223 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    ||||||||||| | |||||||||||||| ||  | ||||||||| | ||||||||||| ||||||    
T  19585705 atttacatcaacttgatgtaaacaatgctttccttcatggagatttacaagaagatgtttatatg 19585641  T

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Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 94953 - 94808
Alignment:
Q  45 aaatgggtatataaaataaagcataagtctgatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttggatt 144  Q
    |||||||| |||||||| || |||||| | |||||   ||| || ||||||||||||| | | || || ||||| || || ||| | || ||| | ||||    
T  94953 aaatgggtgtataaaatcaaacataaggcagatgggagcatagagaggtacaaggccagactggtggctaaaggctataatcaagttgaaggtattgatt 94854  T
Q  145 tctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    | |||||||| ||||||||||| |||||| ||||||||||||||||    
T  94853 tttttgacactttttcaccagtagccaaaattactactgtcagaac 94808  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 6531821 - 6531888
Alignment:
Q  75 gatggatccattgaaaggtacaaggccaaattagttgcaaaaggatacaaccaaatagagggtttgga 142  Q
    ||||||||||| ||||||| ||| ||    |||||||||||||| |||||||||||||||||||||||    
T  6531821 gatggatccatagaaaggttcaaagcacgtttagttgcaaaaggttacaaccaaatagagggtttgga 6531888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 9796093 - 9796043
Alignment:
Q  218 ctggaatttacatcaattagatgtaaacaatgcctttttacatggagatct 268  Q
    ||||||||||||||||||||||||||| | ||| || ||||||||||||||    
T  9796093 ctggaatttacatcaattagatgtaaatattgctttcttacatggagatct 9796043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 52778966 - 52779030
Alignment:
Q  223 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    ||||||||||| | |||||||||||||| ||| | ||||||||| | ||||||||||| ||||||    
T  52778966 atttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttatatg 52779030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 288
Target Start/End: Original strand, 47803917 - 47803980
Alignment:
Q  225 ttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatgg 288  Q
    |||||||||||||||||||| ||||| ||| |||||||| ||||| | |||||  |||||||||    
T  47803917 ttacatcaattagatgtaaaaaatgcttttctacatggatatctcgatgaagaaatatatatgg 47803980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 8190714 - 8190678
Alignment:
Q  230 tcaattagatgtaaacaatgcctttttacatggagat 266  Q
    |||||| |||||||| |||||||||||||||||||||    
T  8190714 tcaatttgatgtaaaaaatgcctttttacatggagat 8190678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 26134522 - 26134571
Alignment:
Q  141 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    ||||| |||||||| ||||||||||| |||||| ||||||||||||||||    
T  26134522 gatttttttgacactttttcaccagtagccaaaattactactgtcagaac 26134571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 21752851 - 21752805
Alignment:
Q  216 aactggaatttacatcaattagatgtaaacaatgcctttttacatgg 262  Q
    |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  21752851 aactggcatttacatcaattagatgtacacaatgcatttttgcatgg 21752805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 33580683 - 33580729
Alignment:
Q  216 aactggaatttacatcaattagatgtaaacaatgcctttttacatgg 262  Q
    |||||| |||||||||||||||||||| ||||||| ||||| |||||    
T  33580683 aactggcatttacatcaattagatgtacacaatgcatttttgcatgg 33580729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 12295 - 12359
Alignment:
Q  223 atttacatcaattagatgtaaacaatgcctttttacatggagatctccaagaagatgtatatatg 287  Q
    ||||||||||| | |||||||||||||| ||| | ||||||||| | ||||||||||| ||||||    
T  12295 atttacatcaacttgatgtaaacaatgcttttcttcatggagatttacaagaagatgtttatatg 12359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 16257600 - 16257649
Alignment:
Q  141 gatttctttgacaccttttcaccagtggccaaacttactactgtcagaac 190  Q
    ||||| |||||||| ||||||||||| |||||| |||||||| |||||||    
T  16257600 gatttttttgacactttttcaccagtagccaaaattactactatcagaac 16257649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Complemental strand, 19606748 - 19606707
Alignment:
Q  225 ttacatcaattagatgtaaacaatgcctttttacatggagat 266  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  19606748 ttacaccaattagatgttcacaatgcctttttacatggagat 19606707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 37012368 - 37012409
Alignment:
Q  225 ttacatcaattagatgtaaacaatgcctttttacatggagat 266  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  37012368 ttacaccaattagatgttcacaatgcctttttacatggagat 37012409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 4245006 - 4245042
Alignment:
Q  230 tcaattagatgtaaacaatgcctttttacatggagat 266  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4245006 tcaatttgatgtaaaaaatgcctttttacatggagat 4245042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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