View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_16 (Length: 273)

Name: NF0813_low_16
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_16
NF0813_low_16
[»] chr1 (9 HSPs)
chr1 (52-233)||(9096233-9096414)
chr1 (53-233)||(9104415-9104595)
chr1 (53-226)||(8873499-8873672)
chr1 (53-233)||(9081966-9082143)
chr1 (56-233)||(9057070-9057244)
chr1 (53-233)||(9142298-9142475)
chr1 (53-233)||(9000169-9000349)
chr1 (53-231)||(8965018-8965196)
chr1 (117-180)||(9453298-9453361)
[»] chr6 (1 HSPs)
chr6 (113-180)||(15926673-15926740)
[»] chr3 (1 HSPs)
chr3 (107-180)||(9160152-9160225)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 52 - 233
Target Start/End: Complemental strand, 9096414 - 9096233
Alignment:
Q  52 attacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaaccttta 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9096414 attacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagtgccaaaacctccttcacccaatttttctttgaaaccttta 9096315  T
Q  152 gccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9096314 gccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 9096233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 9104595 - 9104415
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    |||||||||| ||||||||||||||  || || || || ||||| ||||||||||||| |||||| ||||||||||| ||||| |||||||||||| |||    
T  9104595 ttacccaacatcttgattgccacaccgggcccactacgtaggtttcccttgaacacagtgccaaagcctccttcacctaatttgtctttgaaacctctag 9104496  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9104495 ccattttcttaatttctttgtatgaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 9104415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 53 - 226
Target Start/End: Complemental strand, 8873672 - 8873499
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    |||||||||| |||||||||||||||||| ||||| || || || ||||| ||||||| |||||| ||||||||||| ||||| |||||||||||| |||    
T  8873672 ttacccaacatcttgattgccacacaaggaccgctacgtagttttcccttaaacacagtgccaaagcctccttcacctaatttgtctttgaaacctctag 8873573  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaata 226  Q
    |||| ||||||||||||||||| ||||||||||| |||| |  |||||||| |||||| ||||||| |||||||    
T  8873572 ccattttcttaatttctttgtatgaatatccaatgggcaagagattgttttcttgttgaagatatatttcaata 8873499  T

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Target: chr1; HSP #4
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 9082143 - 9081966
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    |||||||||| |||||||||||||||||| || || || ||||| ||||||||||||| |||||| ||||||| |||||| | |||||||||||||||||    
T  9082143 ttacccaacatcttgattgccacacaaggcccactacgtaggtttcccttgaacacagtgccaaaccctcctttacccaactcttctttgaaacctttag 9082044  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||   |||||    ||||||||||||| ||||||||||||||    
T  9082043 ccattttcttgatttctttgtatgaatatccaatgggcatgaggttgtt---atgttgtagatatatttcaatacattcat 9081966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 56 - 233
Target Start/End: Original strand, 9057070 - 9057244
Alignment:
Q  56 cccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttagcca 155  Q
    ||||||| ||| ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||| ||||||||  |||||||| ||| ||||||    
T  9057070 cccaacatctttattgccacacaagggccgctgcgaaggttccctttgaagacagtgccaaaacctcctttacccaattcctctttgaatcctctagcca 9057169  T
Q  156 tcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    | |||||||||||| |||| ||||||||||| ||||||   |||||   |||||||||||||| ||| ||||||||||    
T  9057170 ttttcttaatttctctgtatgaatatccaatgggcatgaggttgtt---ttgttgtagatatatttcgatacattcat 9057244  T

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Target: chr1; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 233
Target Start/End: Complemental strand, 9142475 - 9142298
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    ||||||| || |||||||||||||||||| || || ||  |||| |||| |||||||| |||||||||||||||||| ||||| |||||||||||| |||    
T  9142475 ttacccagcatcttgattgccacacaaggaccactacgttggttcccctggaacacagtgccaaaacctccttcacctaatttgtctttgaaacctctag 9142376  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    |||| |||||||||||| |||| ||||||||||| |||||   |  ||| | |||||||||||||| ||||||||||||||    
T  9142375 ccattttcttaatttctctgtatgaatatccaatgggcat---aaggttgttttgttgtagatatatttcaatacattcat 9142298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 53 - 233
Target Start/End: Original strand, 9000169 - 9000349
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    |||||||||| ||| |||||||||||||| || || || ||||| ||||| || |||| ||| || |||||||||||||| || ||||||||||||  ||    
T  9000169 ttacccaacatctttattgccacacaaggaccactacgtaggttccccttaaatacagtgccgaagcctccttcacccaacttatctttgaaacctcgag 9000268  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattcat 233  Q
    |||| ||||||||||||||||| || ||||  || |||||    |||||||||||||||||||||| ||||||||||||||    
T  9000269 ccattttcttaatttctttgtatgagtatctgatgggcatcaggttgttttgttgttgtagatatatttcaatacattcat 9000349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 53 - 231
Target Start/End: Original strand, 8965018 - 8965196
Alignment:
Q  53 ttacccaacaacttgattgccacacaagggccgctgcgaaggttacccttgaacacagagccaaaacctccttcacccaatttttctttgaaacctttag 152  Q
    ||||| |||| |||||||||||||||||| || ||||| ||||| || || ||||||| |||||| ||||||||||| ||||| |||||||||||| |||    
T  8965018 ttacctaacatcttgattgccacacaaggtccactgcgtaggttccctttaaacacagtgccaaagcctccttcacctaatttgtctttgaaacctctag 8965117  T
Q  153 ccatcttcttaatttctttgtaggaatatccaataggcatggaattgttttgttgttgtagatatagttcaatacattc 231  Q
    |||| || |||||||| ||||| |||||||  || || ||  |  ||||||||||||||||||| | ||||||||||||    
T  8965118 ccatttttttaatttcattgtatgaatatctgatgggaatcaaggtgttttgttgttgtagatacatttcaatacattc 8965196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 180
Target Start/End: Complemental strand, 9453361 - 9453298
Alignment:
Q  117 aacctccttcacccaatttttctttgaaacctttagccatcttcttaatttctttgtaggaata 180  Q
    |||||||||||||||||||| | ||||||||||| ||||||| ||| || |||||||| |||||    
T  9453361 aacctccttcacccaattttaccttgaaaccttttgccatctgctttatctctttgtatgaata 9453298  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 180
Target Start/End: Complemental strand, 15926740 - 15926673
Alignment:
Q  113 ccaaaacctccttcacccaatttttctttgaaacctttagccatcttcttaatttctttgtaggaata 180  Q
    |||||||| ||||||||||| || ||| |||||||| ||| |||||| || ||||||||||| |||||    
T  15926740 ccaaaaccaccttcacccaacttgtctctgaaacctctagtcatcttttttatttctttgtatgaata 15926673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 180
Target Start/End: Original strand, 9160152 - 9160225
Alignment:
Q  107 acagagccaaaacctccttcacccaatttttctttgaaacctttagccatcttcttaatttctttgtaggaata 180  Q
    ||||| ||||| |||||||||||||| || || || |||| ||||| ||||||||| || |||||||| |||||    
T  9160152 acagaaccaaaccctccttcacccaacttgtccttaaaacttttagtcatcttctttatatctttgtatgaata 9160225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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