View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_17 (Length: 258)

Name: NF0813_low_17
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_17
NF0813_low_17
[»] chr6 (1 HSPs)
chr6 (1-228)||(28737981-28738208)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 28737981 - 28738208
Alignment:
Q  1 tgagggctatgaccaaacaagcagccaggtgaattctctttacactcaacctatccttgttgattgattatgaatgagtgaggactcattgcttctgact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28737981 tgagggctatgaccaaacaagcagccaggtgaattctctttacactcaacctatccttgttgattgattatgaatgagtgaggactcattgcttctgact 28738080  T
Q  101 tctttattgagttttttgttgctacctaagaggacaaatagaaatttgactgaaccattgattcttctttataaaatatgccctagtttttggtttttcc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  28738081 tctttattgagttttttgttgctacctaagaggacaaatagaaatttgactgaaccattgattcttctttataaaatatggcctagtttatggtttttcc 28738180  T
Q  201 tcatgtagaatcttcactttaaatttga 228  Q
    |||||||||||||||| ||||| |||||    
T  28738181 tcatgtagaatcttcaatttaattttga 28738208  T

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