View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0813_low_19 (Length: 253)
Name: NF0813_low_19
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0813_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 47928331 - 47928087
Alignment:
| Q |
1 |
tagttttcatcaaatcaatacaattctgattgtgaattgcggtgattgtgtacaattacttgttttgatgtagtgaatgttgagttaactttgtttttga |
100 |
Q |
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| T |
47928331 |
tagttttgatcaaatcaatacaattctgattgtgaattgcggtgattgtgtacaattacttgttttgatgtagtgaatgttgagttaactttgtttttga |
47928232 |
T |
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| Q |
101 |
ttgtgttcaggtgatttcatccttgactgcttccttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatccc |
200 |
Q |
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| T |
47928231 |
ttgtgttcaggtgatttcatccttgactgcttccttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatccc |
47928132 |
T |
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| Q |
201 |
agaatccatttcatgctttcttcatatgctccagttatctctgct |
245 |
Q |
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| T |
47928131 |
agaatccatttcatgctttcttcatatgctccagttatctctgct |
47928087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 245
Target Start/End: Original strand, 28713473 - 28713555
Alignment:
| Q |
163 |
atgtgactgaattccagaccaacttggtcccatatcccagaatccatttcatgctttcttcatatgctccagttatctctgct |
245 |
Q |
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| T |
28713473 |
atgtgactgaattccagaccaacttggtcccatatcccagaattcatttcatgctttcttcatttgctccagttatctctgct |
28713555 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 108 - 245
Target Start/End: Complemental strand, 51752094 - 51751957
Alignment:
| Q |
108 |
caggtgatttcatccttgactgcttccttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatcccagaatcc |
207 |
Q |
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| T |
51752094 |
caggtgatttcatccctcactgcctctttgaggtttgatggagcactaaatgttgatgtaacagagtttcaaaccaacttggttccttaccctaggatcc |
51751995 |
T |
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| Q |
208 |
atttcatgctttcttcatatgctccagttatctctgct |
245 |
Q |
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| T |
51751994 |
atttcatgctttcctcatatgcacctgttatctctgct |
51751957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 28713409 - 28713472
Alignment:
| Q |
50 |
gtacaattacttgttttgatgtagtgaatgttgagttaa-ctttgtttttgattgtgttcaggt |
112 |
Q |
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| T |
28713409 |
gtacagttacttgttttgatgtagtgaatgttgagttaatatttgtttttgattgtgttcaggt |
28713472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 40377531 - 40377403
Alignment:
| Q |
104 |
tgttcaggtgatttcatccttgactgcttccttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatcccaga |
203 |
Q |
| |
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|||||||||||| || || | |||||||||||||| ||||| ||||| | ||||||||||| |||||||||||||| ||| |||| |||||||| || |
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| T |
40377531 |
tgttcaggtgatatcgtcactaactgcttccttgagatttgacggtgccttgaatgttgatgttactgaattccagactaacctggtgccatatcctagg |
40377432 |
T |
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| Q |
204 |
atccatttcatgctttcttcatatgctcc |
232 |
Q |
| |
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|| || ||||||||||| || |||||||| |
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| T |
40377431 |
attcacttcatgctttcatcttatgctcc |
40377403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 245
Target Start/End: Complemental strand, 35669703 - 35669593
Alignment:
| Q |
135 |
ttgaggtttgatggtgctctcaatgttgatgtgactgaattccagaccaacttggtcccatatcccagaatccatttcatgctttcttcatatgctccag |
234 |
Q |
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|||||||||||||||||| | ||||||||| | ||||| ||||||||||| | || || ||||| | || |||||||||||||| || ||||| || | |
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| T |
35669703 |
ttgaggtttgatggtgctattaatgttgatattactgagttccagaccaatcttgtgccgtatcctcgtattcatttcatgctttcgtcttatgcacctg |
35669604 |
T |
|
| Q |
235 |
ttatctctgct |
245 |
Q |
| |
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||||||||||| |
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| T |
35669603 |
ttatctctgct |
35669593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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