View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0813_low_2 (Length: 773)
Name: NF0813_low_2
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0813_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 375 - 744
Target Start/End: Complemental strand, 18421464 - 18421095
Alignment:
| Q |
375 |
gtacaacattgtttaccttccaagagagagaccacccaagttgatgagcaacaaaacagctaccagcccaacaaacaacacaacagaaagcagccaaaga |
474 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18421464 |
gtacaagattgtttaccttccaagcaagagaccatccaagttgatgagcaacaaaacaactaccaacccaacaaacaacacaacagaaagcagccaaaga |
18421365 |
T |
|
| Q |
475 |
accagctttcagatccaaactagcataaaaaacagagtacaccaaagtaaccaagaacccaagattccaaaccaatacaaaattgcatccaaatagtaaa |
574 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18421364 |
accagctttcagatccaaactagcataaaaaacagagtacaccaaagtaaccaagaacccaatattccaaaccaatacaaaattgcatccaaatagtaaa |
18421265 |
T |
|
| Q |
575 |
aactcgaaattgggaatgtcgaaaaaaggaggggtgaagtagagaaaaataagggctgtgaagaaaattggccaaacgaataaaacatgaattgctatgt |
674 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18421264 |
aactcaaaattgggaaggtcgaaaaagggaggggtgaagtagagaaaaacaagggctgtgaagaaaattggccaaacgaataaaacatgaattgctatgt |
18421165 |
T |
|
| Q |
675 |
taattgggtttctgtgatatgatccatagaaagcgaagtgcttttcaagatcaaataatccagttcttcc |
744 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18421164 |
taattgggtttctgtgatatgatccatagaaagcgaagtgcttttcaagatcaaataatccagttcttcc |
18421095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 85 - 326
Target Start/End: Complemental strand, 18421732 - 18421490
Alignment:
| Q |
85 |
aatatataagctaatgtcatttcatttcccacaagttacttatttgatggtcaagtcagacaatttcttttgttgaaaactcggcatccacccaaagaac |
184 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18421732 |
aatatataagctaatgtcatttcatttcctacaagttacttatttgatggtcaagtcagacaatttcttttgttgaaaactcggcatccacccaaagaac |
18421633 |
T |
|
| Q |
185 |
gtccaatctgggt-accaatcccacagtcaactagcagggagcccaattgaagccagagcaaccggtatccggtcaaatcatacaattacaaagatacaa |
283 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18421632 |
gtccaatctgggggaccaatcccgcagtcaactagcagggagcccaattgaagccagagcaaccggtatccggtcaaatcatacaattacaaagatacaa |
18421533 |
T |
|
| Q |
284 |
taaagacaagaacaagaaaacatgttactgcctctaacatatg |
326 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
18421532 |
taaagacaagaacaagaaaacatgtacctgtctccaacatatg |
18421490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 731
Target Start/End: Original strand, 11485125 - 11485224
Alignment:
| Q |
632 |
gtgaagaaaattggccaaacgaataaaacatgaattgctatgttaattgggtttctgtgatatgatccatagaaagcgaagtgcttttcaagatcaaata |
731 |
Q |
| |
|
||||||| ||||||||||||||| | | |||||| ||||| ||||||| |||||||| || ||||||||||| ||||||||||| ||||| |||| |
|
|
| T |
11485125 |
gtgaagagaattggccaaacgaaaaggatgtgaattatgatgttttttgggttgctgtgataagaaccatagaaagcaaagtgcttttccagatctaata |
11485224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4730 times since January 2019
Visitors: 5752