View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_20 (Length: 252)

Name: NF0813_low_20
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_20
NF0813_low_20
[»] chr6 (11 HSPs)
chr6 (70-252)||(28737680-28737862)
chr6 (212-252)||(383602-383642)
chr6 (213-252)||(24914336-24914375)
chr6 (213-252)||(26597270-26597309)
chr6 (211-252)||(10731467-10731508)
chr6 (211-252)||(25371109-25371150)
chr6 (212-252)||(2157662-2157702)
chr6 (212-252)||(3750306-3750346)
chr6 (212-252)||(10644259-10644299)
chr6 (212-252)||(12349810-12349850)
chr6 (212-252)||(34246232-34246272)
[»] chr4 (24 HSPs)
chr4 (207-252)||(36235668-36235713)
chr4 (211-251)||(45070829-45070869)
chr4 (211-252)||(35207433-35207474)
chr4 (212-252)||(2994716-2994756)
chr4 (212-252)||(7695234-7695274)
chr4 (212-252)||(54927210-54927250)
chr4 (209-252)||(171120-171163)
chr4 (213-252)||(1945361-1945400)
chr4 (213-252)||(35207544-35207583)
chr4 (213-252)||(38675244-38675283)
chr4 (213-252)||(45861001-45861040)
chr4 (213-252)||(45861110-45861149)
chr4 (213-252)||(47628386-47628425)
chr4 (213-252)||(51883121-51883160)
chr4 (213-252)||(54677346-54677385)
chr4 (211-252)||(7695123-7695164)
chr4 (157-194)||(32028216-32028253)
chr4 (212-252)||(15133822-15133862)
chr4 (212-252)||(25856115-25856155)
chr4 (212-252)||(31860756-31860796)
chr4 (212-252)||(35967486-35967526)
chr4 (216-252)||(36235783-36235819)
chr4 (212-252)||(39466699-39466739)
chr4 (216-252)||(47628280-47628316)
[»] chr1 (31 HSPs)
chr1 (212-252)||(26040485-26040525)
chr1 (210-252)||(26040373-26040415)
chr1 (212-252)||(4682932-4682972)
chr1 (212-252)||(15998316-15998356)
chr1 (212-252)||(18023608-18023648)
chr1 (212-252)||(34662400-34662440)
chr1 (213-252)||(435202-435241)
chr1 (213-252)||(11994856-11994895)
chr1 (213-252)||(15998207-15998246)
chr1 (213-252)||(31414861-31414900)
chr1 (213-252)||(39151720-39151759)
chr1 (206-252)||(31481854-31481900)
chr1 (210-252)||(35838823-35838865)
chr1 (210-252)||(38149357-38149399)
chr1 (210-252)||(43147540-43147582)
chr1 (211-252)||(1344473-1344514)
chr1 (211-252)||(13911383-13911424)
chr1 (211-252)||(24023470-24023511)
chr1 (211-252)||(34754999-34755040)
chr1 (211-252)||(52222328-52222369)
chr1 (212-252)||(6763439-6763479)
chr1 (212-252)||(9135623-9135663)
chr1 (212-252)||(24286760-24286800)
chr1 (212-252)||(26059224-26059264)
chr1 (206-250)||(31919829-31919873)
chr1 (212-252)||(41180286-41180326)
chr1 (212-244)||(41649526-41649558)
chr1 (212-252)||(42761228-42761268)
chr1 (212-252)||(45749101-45749141)
chr1 (212-252)||(45925349-45925389)
chr1 (212-244)||(49980612-49980644)
[»] chr2 (15 HSPs)
chr2 (213-252)||(32749931-32749970)
chr2 (211-252)||(7354764-7354805)
chr2 (212-252)||(6048067-6048107)
chr2 (212-252)||(21208887-21208927)
chr2 (212-252)||(33618302-33618342)
chr2 (213-244)||(4032576-4032607)
chr2 (213-252)||(18649617-18649656)
chr2 (213-252)||(24971310-24971349)
chr2 (211-252)||(24971199-24971240)
chr2 (211-252)||(44402189-44402230)
chr2 (212-244)||(7728428-7728460)
chr2 (212-252)||(34438850-34438890)
chr2 (212-252)||(35797874-35797914)
chr2 (212-252)||(40340464-40340504)
chr2 (212-252)||(40669068-40669108)
[»] chr8 (13 HSPs)
chr8 (210-252)||(19163424-19163466)
chr8 (212-252)||(4786697-4786737)
chr8 (212-252)||(38815908-38815948)
chr8 (212-252)||(40739596-40739636)
chr8 (212-252)||(45145597-45145637)
chr8 (213-252)||(5526602-5526641)
chr8 (213-252)||(38815799-38815838)
chr8 (213-252)||(45441098-45441137)
chr8 (210-252)||(13832578-13832620)
chr8 (212-252)||(8769636-8769676)
chr8 (216-252)||(27184319-27184355)
chr8 (212-244)||(33472980-33473012)
chr8 (212-252)||(40305007-40305047)
[»] chr5 (14 HSPs)
chr5 (210-252)||(6168672-6168714)
chr5 (211-252)||(16067178-16067219)
chr5 (212-252)||(5226014-5226054)
chr5 (212-252)||(12891283-12891323)
chr5 (213-252)||(8618393-8618432)
chr5 (213-252)||(16056741-16056780)
chr5 (210-252)||(20503225-20503267)
chr5 (211-252)||(8618502-8618543)
chr5 (212-252)||(4162798-4162838)
chr5 (220-252)||(5226124-5226156)
chr5 (212-252)||(14550137-14550177)
chr5 (212-252)||(18003852-18003892)
chr5 (212-252)||(19784628-19784668)
chr5 (212-252)||(33696760-33696800)
[»] chr3 (18 HSPs)
chr3 (211-252)||(39148794-39148835)
chr3 (212-252)||(29076630-29076670)
chr3 (213-252)||(32827424-32827463)
chr3 (213-252)||(39333395-39333434)
chr3 (209-252)||(44435279-44435322)
chr3 (213-252)||(48908656-48908695)
chr3 (207-252)||(13927385-13927430)
chr3 (211-252)||(34205557-34205598)
chr3 (211-252)||(48895621-48895662)
chr3 (212-252)||(378710-378750)
chr3 (212-252)||(378793-378833)
chr3 (212-252)||(8126125-8126165)
chr3 (212-252)||(20547788-20547828)
chr3 (212-252)||(20547863-20547903)
chr3 (212-252)||(35455558-35455598)
chr3 (212-252)||(35455668-35455708)
chr3 (212-252)||(38082619-38082659)
chr3 (212-252)||(48909139-48909179)
[»] scaffold0321 (2 HSPs)
scaffold0321 (213-252)||(1738-1777)
scaffold0321 (210-244)||(1626-1660)
[»] scaffold0036 (1 HSPs)
scaffold0036 (213-252)||(36406-36445)
[»] scaffold0019 (1 HSPs)
scaffold0019 (213-252)||(67918-67957)
[»] chr7 (15 HSPs)
chr7 (213-252)||(2850972-2851011)
chr7 (213-252)||(10300817-10300856)
chr7 (213-252)||(10300926-10300965)
chr7 (213-252)||(24166259-24166298)
chr7 (205-252)||(28003283-28003330)
chr7 (211-252)||(34907659-34907700)
chr7 (213-250)||(34907772-34907809)
chr7 (216-252)||(14206345-14206381)
chr7 (216-252)||(14215035-14215071)
chr7 (212-252)||(25099641-25099681)
chr7 (212-252)||(25196567-25196607)
chr7 (212-252)||(27878837-27878877)
chr7 (212-252)||(27940850-27940890)
chr7 (212-252)||(32408197-32408237)
chr7 (213-241)||(35593757-35593785)
[»] scaffold0633 (1 HSPs)
scaffold0633 (212-244)||(5438-5470)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 70 - 252
Target Start/End: Original strand, 28737680 - 28737862
Alignment:
Q  70 ggagtttggtatttgatttggtttcacaatgagtatgtgagaatcacgacaaaccattgtaatttttgtaaaaccacactttgtattttttgaaaaacca 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  28737680 ggagtttggtatttgatttggtttcacaatgagtatgtgagaatcaagacaaaccattgtaatttttttaaaaccacactttgtattttttgaaaaacca 28737779  T
Q  170 tagtggatcatcgtgattctaacattgtcactctgatatcaaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |||||||    
T  28737780 tagtggatcatcgtgattctgacattgtcactctgataccaaatacttcctccatttcaaaatataagtaaaattgacttttt 28737862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 383602 - 383642
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  383602 atactccctccgtttcaaaatataagcaaaattcacttttt 383642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 24914336 - 24914375
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  24914336 tactccctccgtttcaaaatataagcaaaattcacttttt 24914375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 26597309 - 26597270
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  26597309 tactccctccgtttcaaaatataagcaaaattcacttttt 26597270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 10731467 - 10731508
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||||||| || |||||||    
T  10731467 aatactccctccgtttcaaaatataagcaaattttacttttt 10731508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 25371150 - 25371109
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||| ||| ||||||||||||||||||||| |||||||    
T  25371150 aatactccatccgtttcaaaatataagcaaaattcacttttt 25371109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 2157702 - 2157662
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  2157702 atactccatccgtttcaaaatataagcaaaattcacttttt 2157662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 3750346 - 3750306
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  3750346 atactccctccgtatcaaaatataagcaaaattgacttttt 3750306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 10644259 - 10644299
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  10644259 atactccctccgtatcaaaatataagcaaaattgacttttt 10644299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 12349810 - 12349850
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  12349810 atactccatccgtttcaaaatataagcaaaattcacttttt 12349850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 34246272 - 34246232
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||| |||||| |||||||    
T  34246272 atactccctccgtttcaaaatataagtaaaattcacttttt 34246232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 36235668 - 36235713
Alignment:
Q  207 atcaaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||    
T  36235668 atcatatactccctccatttcaaaatataagcaaaattcacttttt 36235713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 45070829 - 45070869
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaactttt 251  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  45070829 aatactccctccgtttcaaaatataagcaaaattaactttt 45070869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 35207433 - 35207474
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  35207433 aatactccctccgtttcaaaatataagcaaaatttacttttt 35207474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 2994716 - 2994756
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  2994716 atactccctccgtttcaaaatataagcaaaattcacttttt 2994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 7695274 - 7695234
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  7695274 atactccctccgtttcaaaatataagcaaaatttacttttt 7695234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 54927250 - 54927210
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  54927250 atactccctccgtttcaaaatataagcaaaattcacttttt 54927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Original strand, 171120 - 171163
Alignment:
Q  209 caaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||  ||||||||||||||||||||| |||||||    
T  171120 caaatactccctctgtttcaaaatataagcaaaattcacttttt 171163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 1945361 - 1945400
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  1945361 tactccctccgtttcaaaatataagcaaaattgacttttt 1945400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 35207583 - 35207544
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  35207583 tactccctccgtttcaaaatataagcaaaatttacttttt 35207544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 38675283 - 38675244
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  38675283 tactccctccatttcaaaatataagcaaatttcacttttt 38675244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 45861001 - 45861040
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  45861001 tactccctccgtttcaaaatataagcaaaattcacttttt 45861040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 45861149 - 45861110
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  45861149 tactccctccgtttcaaaatataagcaaaattcacttttt 45861110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 47628425 - 47628386
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  47628425 tactccctccgtttcaaaatataagcaaaattcacttttt 47628386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 51883160 - 51883121
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  51883160 tactccctccatttcaaaatataagtaaaattcacttttt 51883121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 54677346 - 54677385
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  54677346 tactccctccgtttcaaaatataagcaaaattcacttttt 54677385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 7695123 - 7695164
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||| ||| ||||||||||||||||||||| |||||||    
T  7695123 aatactccatccgtttcaaaatataagcaaaattcacttttt 7695164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 32028253 - 32028216
Alignment:
Q  157 ttttgaaaaaccatagtggatcatcgtgattctaacat 194  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  32028253 ttttgaaaaatcatagtggatcatcgtgattctgacat 32028216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 15133822 - 15133862
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  15133822 atacttcctccgtttcaaaatataagcaaaatttacttttt 15133862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 25856155 - 25856115
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  25856155 atactccctccgtttcaaaatataagcaaattttacttttt 25856115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 31860796 - 31860756
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||| ||||||| |||||||    
T  31860796 atactccctccgtttcaaaatataaccaaaattcacttttt 31860756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 35967526 - 35967486
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  35967526 atactccctccgtttctaaatataagcaaaattgacttttt 35967486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 36235819 - 36235783
Alignment:
Q  216 tccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  36235819 tccctccgtttcaaaatataagcaaaatttacttttt 36235783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 39466699 - 39466739
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  39466699 atactccctccgtatcaaaatataagcaaaattcacttttt 39466739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 47628280 - 47628316
Alignment:
Q  216 tccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  47628280 tccctccgtttcaaaatataagcaaaatttacttttt 47628316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 26040525 - 26040485
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  26040525 atactccctccgtttcaaaatataagcaaaattaacttttt 26040485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 26040373 - 26040415
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||||||||||||||| |||||| |||||||    
T  26040373 aaatactccctccatttcaaaatataaggaaaattcacttttt 26040415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 4682932 - 4682972
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | |||||||||||||||||||||||||||    
T  4682932 atactccctccgtatcaaaatataagcaaaattaacttttt 4682972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 15998356 - 15998316
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  15998356 atactccctccgtttcaaaatataagcaaaattcacttttt 15998316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 18023608 - 18023648
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  18023608 atacttcctccatttcaaaatataagcaaaatttacttttt 18023648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 34662400 - 34662440
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  34662400 atactccctccgtttcaaaatataagcaaaattcacttttt 34662440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 435202 - 435241
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  435202 tactccctccgtttcaaaatataagcaaaattgacttttt 435241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 11994856 - 11994895
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  11994856 tactccctccgtttcaaaatataagcaaaattcacttttt 11994895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 15998207 - 15998246
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  15998207 tactccctccgtttcaaaatataagcaaaatttacttttt 15998246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 31414900 - 31414861
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  31414900 tactccctccgtttcaaaatataagcaaaattcacttttt 31414861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 39151720 - 39151759
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  39151720 tactccctccgtttcaaaatataagcaaaattcacttttt 39151759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 31481854 - 31481900
Alignment:
Q  206 tatcaaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||| |||||||||| ||||||||||||||||||| | |||||||    
T  31481854 tatcaagtactccctccgtttcaaaatataagcaaaaatcacttttt 31481900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 35838865 - 35838823
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  35838865 aaatactccatccgtttcaaaatataagcaaaattcacttttt 35838823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 38149357 - 38149399
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| ||| ||||||||||||||||||||| |||||||    
T  38149357 aaatactccttccgtttcaaaatataagcaaaattcacttttt 38149399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 43147582 - 43147540
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||    
T  43147582 aaatactccctccgttttaaaatataagcaaaattcacttttt 43147540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 1344514 - 1344473
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||| ||||||||||||||||| |||||||    
T  1344514 aatactccctccgttttaaaatataagcaaaatttacttttt 1344473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 13911424 - 13911383
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||| ||| ||||||||||||||||||||| |||||||    
T  13911424 aatactccatccgtttcaaaatataagcaaaattcacttttt 13911383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 24023511 - 24023470
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||  ||||||||||||||||||||||||    
T  24023511 aatactccctccgtttttaaatataagcaaaattaacttttt 24023470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 34754999 - 34755040
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||||||||||||| ||||||| |||||||    
T  34754999 aatactccctccgtttcaaaatataaacaaaattcacttttt 34755040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 52222369 - 52222328
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||| |||||||||||||| || |||||||    
T  52222369 aatactccctccattttaaaatataagcaaattttacttttt 52222328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6763479 - 6763439
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  6763479 atactccctccgtttcaaaatataagcaaattttacttttt 6763439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9135663 - 9135623
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  9135663 atactccctccgtatcaaaatataagcaaaattcacttttt 9135623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 24286760 - 24286800
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  24286760 atactccatccgtttcaaaatataagcaaaattcacttttt 24286800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 26059264 - 26059224
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  26059264 atactccctccgtttcaaaatataagcaaattttacttttt 26059224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 250
Target Start/End: Original strand, 31919829 - 31919873
Alignment:
Q  206 tatcaaatactccctccatttcaaaatataagcaaaattaacttt 250  Q
    |||||| |||||||||| ||| ||||||||||||||||| |||||    
T  31919829 tatcaattactccctccgttttaaaatataagcaaaattcacttt 31919873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 41180326 - 41180286
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||| || |||||||    
T  41180326 atactccctctatttcaaaatataagcaaattttacttttt 41180286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 41649526 - 41649558
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||| |||||||||||||||||||||    
T  41649526 atactccctccgtttcaaaatataagcaaaatt 41649558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 42761228 - 42761268
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  42761228 atactccctacgtttcaaaatataagcaaaattcacttttt 42761268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 45749141 - 45749101
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  45749141 atactccctctgtttcaaaatataagcaaaattgacttttt 45749101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 45925389 - 45925349
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  45925389 atactccctccgtatcaaaatataagcaaaatttacttttt 45925349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 49980612 - 49980644
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||| |||||||||||||||||||||    
T  49980612 atactccctccgtttcaaaatataagcaaaatt 49980644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 32749970 - 32749931
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  32749970 tactccctccatttcaaaatataagcaaaattcacttttt 32749931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 7354764 - 7354805
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  7354764 aatactccctccgtttcaaaatataagcaaaattcacttttt 7354805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 6048107 - 6048067
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  6048107 atactccctccgtttcaaaatataagcaaaattcacttttt 6048067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 21208887 - 21208927
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  21208887 atactccctccgtttcaaaatataagcaaaattcacttttt 21208927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 33618342 - 33618302
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  33618342 atactccctccgtttcaaaatataagcaaaattcacttttt 33618302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 244
Target Start/End: Original strand, 4032576 - 4032607
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||||||||||||||||||||||||    
T  4032576 tactccctccatttcaaaatataagcaaaatt 4032607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 18649617 - 18649656
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  18649617 tactccctccgtttcaaaatataagcaaaattcacttttt 18649656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 24971349 - 24971310
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  24971349 tactccctccatttcaaaatataagcaaattttacttttt 24971310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 24971199 - 24971240
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||||||| || |||||||    
T  24971199 aatactccctccgtttcaaaatataagcaaattttacttttt 24971240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 44402230 - 44402189
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| |||| ||||||||||||||||||||| |||||||    
T  44402230 aatactctctccgtttcaaaatataagcaaaattcacttttt 44402189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 7728428 - 7728460
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||| |||||||||||||||||||||    
T  7728428 atactccctccgtttcaaaatataagcaaaatt 7728460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 34438890 - 34438850
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| |||| ||||||||||||||||||||||||    
T  34438890 atactccatccgtttctaaatataagcaaaattaacttttt 34438850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 35797914 - 35797874
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||  |||||||| |||||||||||||||    
T  35797914 atactccctccatttttaaatataaacaaaattaacttttt 35797874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 40340464 - 40340504
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  40340464 atactccctccgtttcaaaatataagcaaattttacttttt 40340504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 40669108 - 40669068
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||| |||||||||||||||| |||||||    
T  40669108 atactccctccgtttctaaatataagcaaaatttacttttt 40669068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 19163466 - 19163424
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  19163466 aaatactccctccgtttcaaaatataagcaaaattcacttttt 19163424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 4786697 - 4786737
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  4786697 atactccctccgtttcaaaatataagcaaaattcacttttt 4786737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 38815948 - 38815908
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  38815948 atactccctccgtttcaaaatataagcaaaattcacttttt 38815908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 40739636 - 40739596
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  40739636 atactccctccgtttcaaaatataagcaaaatttacttttt 40739596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 45145597 - 45145637
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  45145597 atactccctccgtttcaaaatataagcaaaattcacttttt 45145637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 5526641 - 5526602
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  5526641 tactccctccgtttcaaaatataagcaaaattcacttttt 5526602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 38815799 - 38815838
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  38815799 tactccctccgtttcaaaatataagcaaaattcacttttt 38815838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 45441098 - 45441137
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  45441098 tactccctccatttcaaaatataagtaaaattcacttttt 45441137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 13832620 - 13832578
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| |||||||||||||||||| |||||| |||||||    
T  13832620 aaatactccatccatttcaaaatataagtaaaattcacttttt 13832578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 8769636 - 8769676
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  8769636 atactccatccgtttcaaaatataagcaaaattcacttttt 8769676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Complemental strand, 27184355 - 27184319
Alignment:
Q  216 tccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  27184355 tccctccgtttcaaaatataagcaaaatttacttttt 27184319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Original strand, 33472980 - 33473012
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||| |||||||||||||||||||||    
T  33472980 atactccctccgtttcaaaatataagcaaaatt 33473012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 40305007 - 40305047
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  40305007 atactccctccgtatcaaaatataagcaaaattcacttttt 40305047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 6168672 - 6168714
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||| ||||||||||||||||||||| |||||||    
T  6168672 aaatactccctccgtttcaaaatataagcaaaattcacttttt 6168714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 16067219 - 16067178
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  16067219 aatactccctccgtttcaaaatataagcaaaattcacttttt 16067178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 5226014 - 5226054
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  5226014 atactccctccgtttcaaaatataagcaaaattcacttttt 5226054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 12891283 - 12891323
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  12891283 atactcactccatttcaaaatataagcaaaattcacttttt 12891323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 8618393 - 8618432
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  8618393 tactccctccgtttcaaaatataagcaaaattcacttttt 8618432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 16056741 - 16056780
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  16056741 tactccctccgtttcaaaatataagcaaaattgacttttt 16056780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 20503225 - 20503267
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  20503225 aaatactccgtccatttctaaatataagcaaaattaatttttt 20503267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 8618543 - 8618502
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  8618543 aatactccctcgctttcaaaatataagcaaaattcacttttt 8618502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 4162798 - 4162838
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  4162798 atactccttccgtttcaaaatataagcaaaattcacttttt 4162838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 252
Target Start/End: Complemental strand, 5226156 - 5226124
Alignment:
Q  220 tccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||| |||||||    
T  5226156 tccatttcaaaatataagcaaaattcacttttt 5226124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 14550177 - 14550137
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  14550177 atactccctccgttttaaaatataagcaaaattcacttttt 14550137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 18003852 - 18003892
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| ||| ||||||||||||||||||||| |||||||    
T  18003852 atactccatccgtttcaaaatataagcaaaattcacttttt 18003892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 19784668 - 19784628
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  19784668 atactccctccgtttcaaaatataagcaaattttacttttt 19784628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 33696800 - 33696760
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  33696800 atactccctccgtttcaaaatataagcaaattttacttttt 33696760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 39148835 - 39148794
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||||||||||||||||||||| |||||||    
T  39148835 aatactccctccgtttcaaaatataagcaaaatttacttttt 39148794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 29076670 - 29076630
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||||| |||||||||||||||| |||||||    
T  29076670 atactccctccatttctaaatataagcaaaattgacttttt 29076630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 32827424 - 32827463
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  32827424 tactccctccatttcaaaatataagcaaactttacttttt 32827463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 39333434 - 39333395
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  39333434 tactccctccgtttcaaaatataagcaaaatttacttttt 39333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 44435322 - 44435279
Alignment:
Q  209 caaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||| |||||||||||||||||| || |||||||    
T  44435322 caaatactccctccgtttcaaaatataagcaaatttcacttttt 44435279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 48908656 - 48908695
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  48908656 tactccctccgtttcaaaatataagcaaaattcacttttt 48908695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 252
Target Start/End: Original strand, 13927385 - 13927430
Alignment:
Q  207 atcaaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||| ||||||||||| ||||||||||||||| ||||| |||||||    
T  13927385 atcatatactccctccgtttcaaaatataagcgaaattcacttttt 13927430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 34205557 - 34205598
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||||||| || |||||||    
T  34205557 aatactccctccgtttcaaaatataagcaaattttacttttt 34205598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 48895662 - 48895621
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| ||| ||||||||||||||||| |||||||    
T  48895662 aatactccctccgttttaaaatataagcaaaattcacttttt 48895621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 378710 - 378750
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  378710 atactccctccgttttaaaatataagcaaaattcacttttt 378750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 378833 - 378793
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  378833 atactccctccgttttaaaatataagcaaaattcacttttt 378793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 8126125 - 8126165
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  8126125 atactccctccgtttcaaaatataagcaaattttacttttt 8126165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 20547788 - 20547828
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  20547788 atactccctccgttttaaaatataagcaaaattcacttttt 20547828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 20547903 - 20547863
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  20547903 atactctctccgtttcaaaatataagcaaaattcacttttt 20547863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 35455558 - 35455598
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  35455558 atactccctccgttttaaaatataagcaaaattcacttttt 35455598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 35455708 - 35455668
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||| ||| ||||||||||||||||||||||| |||||||    
T  35455708 atactaccttcatttcaaaatataagcaaaattcacttttt 35455668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 38082659 - 38082619
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||||||||||||| ||||||| |||||||    
T  38082659 atactccctccgtttcaaaatataaacaaaattcacttttt 38082619  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 48909179 - 48909139
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| ||| ||||||||||||||||| |||||||    
T  48909179 atactccctccgttttaaaatataagcaaaattcacttttt 48909139  T

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Target: scaffold0321 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 1777 - 1738
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  1777 tactccctccgtttcaaaatataagcaaaatttacttttt 1738  T

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Target: scaffold0321; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 244
Target Start/End: Original strand, 1626 - 1660
Alignment:
Q  210 aaatactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||||| |||||||||||||||||||||    
T  1626 aaatactccctccgtttcaaaatataagcaaaatt 1660  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 36406 - 36445
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  36406 tactccctccgtttcaaaatataagcaaaattcacttttt 36445  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 67918 - 67957
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  67918 tactccctccatttcaaaatataagtaaaattcacttttt 67957  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 2850972 - 2851011
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  2850972 tactccctccgtttcaaaatataagcaaaattcacttttt 2851011  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 10300817 - 10300856
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||||| ||||||||||||||||| |||||||    
T  10300817 tactccctccattttaaaatataagcaaaattcacttttt 10300856  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 10300965 - 10300926
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  10300965 tactccctccgtttcaaaatataagcaaaattcacttttt 10300926  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 252
Target Start/End: Original strand, 24166259 - 24166298
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  24166259 tactccctccatttctaaatataagcaaaattgacttttt 24166298  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 28003330 - 28003283
Alignment:
Q  205 atatcaaatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||| |||||||||| |||||||||||||||||| || |||||||    
T  28003330 atatcaactactccctccgtttcaaaatataagcaaattttacttttt 28003283  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 34907659 - 34907700
Alignment:
Q  211 aatactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||| |||||| |||||||    
T  34907659 aatactccctccgtttcaaaatataagtaaaatttacttttt 34907700  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 34907809 - 34907772
Alignment:
Q  213 tactccctccatttcaaaatataagcaaaattaacttt 250  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  34907809 tactccctccgtttcaaaatataagcaaaatttacttt 34907772  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14206345 - 14206381
Alignment:
Q  216 tccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||||| |||||||    
T  14206345 tccctccatttctaaatataagcaaaattgacttttt 14206381  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 14215035 - 14215071
Alignment:
Q  216 tccctccatttcaaaatataagcaaaattaacttttt 252  Q
    |||||||||||| |||||||||||||||| |||||||    
T  14215035 tccctccatttctaaatataagcaaaattgacttttt 14215071  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 25099681 - 25099641
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||  ||||||||||||||||||||||||    
T  25099681 atactccctccgtttttaaatataagcaaaattaacttttt 25099641  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 25196567 - 25196607
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||| ||||| ||||||||||||||||||||| |||||||    
T  25196567 atacttcctccgtttcaaaatataagcaaaattcacttttt 25196607  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 27878837 - 27878877
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| | ||||||||||||||||||| |||||||    
T  27878837 atactccctccgtatcaaaatataagcaaaattcacttttt 27878877  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 27940890 - 27940850
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  27940890 atactccctccgtttcaaaatataagcaaattttacttttt 27940850  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 32408237 - 32408197
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaattaacttttt 252  Q
    ||||||||| | ||||||||||||||||||||| |||||||    
T  32408237 atactcccttcgtttcaaaatataagcaaaattcacttttt 32408197  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 35593785 - 35593757
Alignment:
Q  213 tactccctccatttcaaaatataagcaaa 241  Q
    |||||||||||||||||||||||||||||    
T  35593785 tactccctccatttcaaaatataagcaaa 35593757  T

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Target: scaffold0633 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 5470 - 5438
Alignment:
Q  212 atactccctccatttcaaaatataagcaaaatt 244  Q
    ||||||||||| |||||||||||||||||||||    
T  5470 atactccctccgtttcaaaatataagcaaaatt 5438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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