View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_23 (Length: 245)

Name: NF0813_low_23
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_23
NF0813_low_23
[»] chr2 (31 HSPs)
chr2 (3-240)||(44955146-44955384)
chr2 (4-114)||(44721682-44721792)
chr2 (7-75)||(22538549-22538617)
chr2 (4-84)||(36665437-36665517)
chr2 (4-75)||(22297469-22297540)
chr2 (4-75)||(24034070-24034141)
chr2 (4-55)||(32943346-32943397)
chr2 (4-57)||(580818-580871)
chr2 (7-56)||(16028144-16028193)
chr2 (4-65)||(32988357-32988418)
chr2 (4-57)||(38820582-38820635)
chr2 (4-104)||(9547115-9547215)
chr2 (17-57)||(32891619-32891659)
chr2 (4-64)||(39726462-39726522)
chr2 (4-75)||(2114452-2114523)
chr2 (4-99)||(20122468-20122563)
chr2 (17-96)||(23683716-23683795)
chr2 (4-99)||(36426849-36426944)
chr2 (7-57)||(10262749-10262799)
chr2 (7-65)||(31956876-31956934)
chr2 (4-65)||(7086260-7086321)
chr2 (4-65)||(17239908-17239969)
chr2 (4-57)||(30474230-30474283)
chr2 (4-57)||(36481076-36481129)
chr2 (4-57)||(36520815-36520868)
chr2 (7-99)||(15392204-15392296)
chr2 (17-57)||(17154669-17154709)
chr2 (29-69)||(17487739-17487779)
chr2 (4-56)||(18386848-18386900)
chr2 (8-64)||(27495549-27495605)
chr2 (4-40)||(32891288-32891324)
[»] chr8 (27 HSPs)
chr8 (8-99)||(6978831-6978922)
chr8 (18-75)||(6064398-6064455)
chr8 (4-65)||(43847709-43847770)
chr8 (4-99)||(23857316-23857412)
chr8 (4-57)||(5184922-5184975)
chr8 (4-65)||(7649536-7649596)
chr8 (4-57)||(9524964-9525017)
chr8 (4-65)||(10970273-10970334)
chr8 (4-57)||(15042400-15042453)
chr8 (4-57)||(24608518-24608571)
chr8 (18-62)||(6970674-6970718)
chr8 (17-57)||(25119228-25119268)
chr8 (8-64)||(25139915-25139971)
chr8 (17-65)||(30942626-30942674)
chr8 (18-65)||(1588788-1588835)
chr8 (4-55)||(39484407-39484458)
chr8 (17-75)||(2376538-2376596)
chr8 (5-75)||(24074514-24074584)
chr8 (4-57)||(4798576-4798629)
chr8 (4-57)||(17980289-17980342)
chr8 (4-49)||(28465625-28465670)
chr8 (1-34)||(42523883-42523916)
chr8 (19-56)||(42761901-42761938)
chr8 (17-53)||(7603751-7603787)
chr8 (17-65)||(8034550-8034598)
chr8 (17-57)||(10199777-10199817)
chr8 (7-75)||(26703907-26703975)
[»] chr6 (14 HSPs)
chr6 (8-99)||(34365746-34365837)
chr6 (4-65)||(10377151-10377212)
chr6 (4-57)||(19165358-19165411)
chr6 (7-57)||(9438312-9438362)
chr6 (4-57)||(18244047-18244100)
chr6 (4-57)||(32057041-32057094)
chr6 (4-57)||(12089104-12089157)
chr6 (4-57)||(19642582-19642635)
chr6 (4-65)||(35190770-35190831)
chr6 (23-75)||(11520743-11520795)
chr6 (4-40)||(12127961-12127997)
chr6 (4-40)||(22389802-22389838)
chr6 (4-40)||(22501025-22501061)
chr6 (4-56)||(23771040-23771092)
[»] chr4 (30 HSPs)
chr4 (7-99)||(33944356-33944448)
chr4 (7-65)||(9172398-9172456)
chr4 (4-98)||(53697974-53698068)
chr4 (4-65)||(32885695-32885756)
chr4 (4-57)||(47017981-47018034)
chr4 (4-56)||(6053987-6054039)
chr4 (4-84)||(20181218-20181298)
chr4 (5-65)||(51077875-51077935)
chr4 (8-99)||(34773676-34773767)
chr4 (18-65)||(48501685-48501732)
chr4 (4-75)||(52560771-52560842)
chr4 (18-57)||(53815717-53815756)
chr4 (20-98)||(6637716-6637794)
chr4 (17-75)||(35333005-35333063)
chr4 (17-99)||(43327318-43327400)
chr4 (4-57)||(3544467-3544520)
chr4 (4-57)||(5635196-5635249)
chr4 (4-57)||(9285694-9285747)
chr4 (8-80)||(13211364-13211436)
chr4 (4-65)||(23661385-23661446)
chr4 (18-59)||(26708585-26708625)
chr4 (3-75)||(27296827-27296900)
chr4 (18-75)||(36954158-36954215)
chr4 (4-57)||(56546484-56546537)
chr4 (4-40)||(4722516-4722552)
chr4 (17-57)||(8690234-8690274)
chr4 (19-59)||(15640476-15640516)
chr4 (4-40)||(35031390-35031426)
chr4 (4-40)||(43606152-43606188)
chr4 (4-40)||(50657887-50657923)
[»] chr1 (24 HSPs)
chr1 (7-75)||(11802037-11802105)
chr1 (4-99)||(4429475-4429570)
chr1 (4-99)||(15368812-15368907)
chr1 (4-57)||(37733762-37733815)
chr1 (4-96)||(16110016-16110108)
chr1 (4-84)||(48110536-48110616)
chr1 (4-99)||(4354098-4354193)
chr1 (4-65)||(17871108-17871167)
chr1 (7-57)||(20357470-20357520)
chr1 (7-57)||(20562435-20562485)
chr1 (18-65)||(11907329-11907376)
chr1 (8-99)||(23930537-23930628)
chr1 (23-65)||(43020637-43020679)
chr1 (7-57)||(49251430-49251480)
chr1 (4-65)||(18923912-18923973)
chr1 (8-57)||(23464021-23464070)
chr1 (4-57)||(42831954-42832007)
chr1 (4-57)||(46116209-46116262)
chr1 (4-37)||(49606753-49606786)
chr1 (4-40)||(5172654-5172690)
chr1 (17-57)||(17056915-17056955)
chr1 (5-57)||(30649101-30649153)
chr1 (4-40)||(38020000-38020036)
chr1 (4-40)||(43555926-43555962)
[»] chr7 (21 HSPs)
chr7 (4-75)||(27047732-27047803)
chr7 (17-65)||(30699822-30699870)
chr7 (4-99)||(7262991-7263086)
chr7 (4-57)||(23685589-23685642)
chr7 (4-57)||(34962007-34962060)
chr7 (4-65)||(36316001-36316062)
chr7 (4-57)||(46716340-46716393)
chr7 (7-75)||(25818296-25818364)
chr7 (4-60)||(38025348-38025404)
chr7 (2-65)||(30152746-30152809)
chr7 (7-65)||(43970880-43970938)
chr7 (7-56)||(2366367-2366416)
chr7 (4-45)||(22047527-22047568)
chr7 (4-57)||(30644176-30644229)
chr7 (4-57)||(34948113-34948166)
chr7 (18-75)||(41139108-41139165)
chr7 (4-57)||(44437860-44437913)
chr7 (4-57)||(47552220-47552273)
chr7 (4-40)||(4590658-4590694)
chr7 (4-40)||(21086111-21086147)
chr7 (23-75)||(35195869-35195921)
[»] scaffold0191 (1 HSPs)
scaffold0191 (4-65)||(16854-16914)
[»] scaffold0008 (1 HSPs)
scaffold0008 (4-65)||(43724-43784)
[»] chr5 (19 HSPs)
chr5 (4-65)||(18872528-18872589)
chr5 (4-65)||(27440325-27440386)
chr5 (2-65)||(32158441-32158504)
chr5 (18-99)||(3102120-3102201)
chr5 (4-57)||(21017641-21017694)
chr5 (8-60)||(14487572-14487624)
chr5 (4-84)||(19982256-19982336)
chr5 (18-65)||(6447507-6447554)
chr5 (4-75)||(42455411-42455482)
chr5 (23-77)||(7147034-7147088)
chr5 (7-57)||(26169047-26169097)
chr5 (7-57)||(33800903-33800953)
chr5 (4-58)||(40339133-40339187)
chr5 (20-65)||(6614065-6614110)
chr5 (4-57)||(18478010-18478063)
chr5 (4-57)||(19059039-19059092)
chr5 (4-40)||(29050807-29050843)
chr5 (7-55)||(33729788-33729836)
chr5 (4-84)||(42801449-42801529)
[»] chr3 (29 HSPs)
chr3 (4-57)||(33206764-33206817)
chr3 (4-65)||(50724375-50724435)
chr3 (4-65)||(50788413-50788473)
chr3 (4-99)||(13539957-13540052)
chr3 (4-59)||(43566829-43566884)
chr3 (4-65)||(19540348-19540409)
chr3 (4-57)||(20244141-20244194)
chr3 (2-99)||(49146089-49146186)
chr3 (4-65)||(49639035-49639096)
chr3 (8-65)||(53467960-53468016)
chr3 (19-75)||(38555045-38555100)
chr3 (9-57)||(39492833-39492881)
chr3 (4-59)||(40786287-40786342)
chr3 (18-65)||(14868706-14868753)
chr3 (4-59)||(35849312-35849367)
chr3 (4-99)||(36727456-36727550)
chr3 (18-65)||(47191394-47191441)
chr3 (17-99)||(31698553-31698635)
chr3 (7-65)||(32508821-32508879)
chr3 (4-57)||(14417875-14417928)
chr3 (3-40)||(21420241-21420278)
chr3 (4-57)||(24751295-24751348)
chr3 (20-65)||(28226214-28226259)
chr3 (18-99)||(36331719-36331800)
chr3 (7-84)||(55195869-55195946)
chr3 (4-56)||(34136770-34136822)
chr3 (4-40)||(34344829-34344865)
chr3 (4-40)||(34503222-34503258)
chr3 (4-56)||(42271049-42271101)
[»] scaffold0178 (1 HSPs)
scaffold0178 (4-97)||(4330-4423)
[»] scaffold0343 (1 HSPs)
scaffold0343 (17-65)||(8580-8628)
[»] scaffold0308 (1 HSPs)
scaffold0308 (4-75)||(7082-7154)
[»] scaffold0036 (1 HSPs)
scaffold0036 (18-57)||(25047-25086)
[»] scaffold1990 (1 HSPs)
scaffold1990 (17-55)||(914-952)
[»] scaffold0092 (1 HSPs)
scaffold0092 (17-55)||(47354-47392)
[»] scaffold0062 (1 HSPs)
scaffold0062 (4-57)||(7053-7106)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 3 - 240
Target Start/End: Complemental strand, 44955384 - 44955146
Alignment:
Q  3 ttagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagccgat 102  Q
    ||||||||||||| |||||||||||||||||||||  | || |||||||||||||||| ||||  ||||||||||| |||||||||  ||||||||||||    
T  44955384 ttagctcagttgttaggacaatgcattattatatgtcgcggttggggttcgaacctcggacaccccatttatttatcttatacagtaaattctagccgat 44955285  T
Q  103 aggttatctgacnnnnnnn-tacattaaaataacctaggaataattttacagtcttgttcaaagccaaaaattatttttattcttaattttaaattccag 201  Q
    || ||| || ||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44955284 agattacctcacaaaaaaaatacattaaaataacctaggaataattttacagtcttgttcaaagccaaaaattatttttattcttaattttaaattccag 44955185  T
Q  202 ggttgttcaacaaagcatcccacagcattcccatttcat 240  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  44955184 ggttgttcaacaaagcatcccacagcattccgatttcat 44955146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 44721792 - 44721682
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagccgata 103  Q
    |||||||||||  || ||||||||||||||||||||| ||  ||||||||||||||| ||||  |||||||| |  |||||  ||| |||||||||  ||    
T  44721792 tagctcagttggtagaacaatgcattattatatgcaggggtcggggttcgaacctcggacaccccatttattcaccttataaggtgaattctagccacta 44721693  T
Q  104 ggttatctgac 114  Q
    |||||||||||    
T  44721692 ggttatctgac 44721682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 22538549 - 22538617
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||  |||||||||||||||||||||||| || ||||||||||| | ||||||| ||| |||||    
T  22538549 ctcagttggtaggacaatgcattattatatgcaggggttggggttcgaatcccgaacacctcacttatt 22538617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 36665437 - 36665517
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    ||||||||||   |||||||||||||||||||||||| ||  ||||||||||||||| ||||  || ||||| ||||||||    
T  36665437 tagctcagtttgtaggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcattttata 36665517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 22297540 - 22297469
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||| || ||||  ||||||||    
T  22297540 tagctcagttggtaggacaatgcattattatatgcaggggcaggggttcgaaccccggacaccccatttatt 22297469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 24034141 - 24034070
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||| |||||  |||||||||||||||||||||||| ||  ||||||||||||||| ||||| || |||||    
T  24034141 tagcttagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcggacactccacttatt 24034070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 32943346 - 32943397
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaa 55  Q
    |||||||||||  |||||||||||||||||||||||| || |||||||||||    
T  32943346 tagctcagttggtaggacaatgcattattatatgcagaggctggggttcgaa 32943397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 580871 - 580818
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  580871 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 580818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 16028193 - 16028144
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    ||||||||  |||||||||||||||||||||||||||  |||||||||||    
T  16028193 ctcagttggtaggacaatgcattattatatgcagtggtcggggttcgaac 16028144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 32988357 - 32988418
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  | ||||||||||||||||| |||| || |||||||||||| ||||||||    
T  32988357 tagctcagttggtaagacaatgcattattatacgcaggggctggggttcgaacatcgaacac 32988418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 38820582 - 38820635
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||| ||||||||||||||||||||| || || ||||||| |||||    
T  38820582 tagctcagttgttaggacaatgcattattatatgtaggggctggggtttgaacc 38820635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 9547215 - 9547115
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagccgata 103  Q
    |||||||||||  ||||||||| |||||||||||||| ||  |||||||||| | |||||||  || ||||| || |||||  ||| ||||||||| |||    
T  9547215 tagctcagttgataggacaatgtattattatatgcaggggccggggttcgaatcccgaacaccccacttattcatcttataaggtgaattctagccaata 9547116  T
Q  104 g 104  Q
    |    
T  9547115 g 9547115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 32891619 - 32891659
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  32891619 aggacaatgcattattatatgcaggggttggggttcgaacc 32891659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 39726522 - 39726462
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaaca 64  Q
    |||||||||||  ||||||||||||||||||||| || ||  | |||||||||||||||||    
T  39726522 tagctcagttggtaggacaatgcattattatatgtaggggtcgaggttcgaacctcgaaca 39726462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 2114523 - 2114452
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||  || |||||||||||||||||| || ||  |||||||||||| || |||| |||||||||    
T  2114523 tagctcagttggtagaacaatgcattattatatgtaggggtcggggttcgaaccccggacacctcatttatt 2114452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 20122563 - 20122468
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  ||||||||||||||||||||| || ||  |||||||||||| || ||||  || ||||| || |||||  ||| |||||||||    
T  20122563 tagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccggacacgccacttattcatcttataaggtgaattctagcc 20122468  T

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Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 23683716 - 23683795
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattcta 96  Q
    |||||||| |||||||||||| || || |||||||||||||||  ||||  |||||||| || ||||| |||| ||||||    
T  23683716 aggacaatacattattatatgtaggggttggggttcgaacctcagacaccccatttattcatcttataaagtgaattcta 23683795  T

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Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 36426944 - 36426849
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    ||||||| |||  ||||||||||||||||||||| || || ||||||||||||  |||||||  || ||||| || |||||  ||| |||||||||    
T  36426944 tagctcacttggtaggacaatgcattattatatgtaggggttggggttcgaactccgaacaccccacttattcatcttataaggtgaattctagcc 36426849  T

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Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 10262749 - 10262799
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  10262749 ctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacc 10262799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 31956876 - 31956934
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||  ||||||||||||||||||||| || || ||||||||||||  |||||||    
T  31956876 ctcagttggtaggacaatgcattattatatgtaggggctggggttcgaactccgaacac 31956934  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 7086260 - 7086321
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  ||| |||||||||||||||||||| ||  ||| |||||||| |||||||    
T  7086260 tagctcagttggtagggcaatgcattattatatgcaggggccgggattcgaaccccgaacac 7086321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 17239908 - 17239969
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  || ||||||||||||||||||||| ||  ||| ||||||||||| ||||    
T  17239908 tagctcagttggtagaacaatgcattattatatgcaggggtcgggattcgaacctcggacac 17239969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 30474283 - 30474230
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  | ||||||||||    
T  30474283 tagctcagttggtaggacaatgcattattatatgcaggggccgaggttcgaacc 30474230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 36481076 - 36481129
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||  || ||| |||||||||    
T  36481076 tagctcagttggtaggacaatgcattattatatgcatgggctggagttcgaacc 36481129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 36520868 - 36520815
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||||||||||||||| || ||  ||||||||||||    
T  36520868 tagctcagttggtaggacaatgcattattatatgtaggggtcggggttcgaacc 36520815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 15392296 - 15392204
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    ||||||||  ||||||||||||||||||||| ||  |  | ||||||||||||| |||| ||| ||||| | ||||||  ||||||| |||||    
T  15392296 ctcagttggtaggacaatgcattattatatgtaggagacgaggttcgaacctcggacacctcacttattcactttataaggtgtattttagcc 15392204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 17154669 - 17154709
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  17154669 aggacaatgcattattatatgcaggggccggggttcgaacc 17154709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 17487739 - 17487779
Alignment:
Q  29 tattatatgcagtgggtggggttcgaacctcgaacacttca 69  Q
    ||||||||||||||| ||||||||||||| || ||||||||    
T  17487739 tattatatgcagtggctggggttcgaaccccggacacttca 17487779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 18386900 - 18386848
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    ||||||| |||  ||||||||||||||||||||| || || ||||||||||||    
T  18386900 tagctcaattggtaggacaatgcattattatatgtaggggctggggttcgaac 18386848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 27495549 - 27495605
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaaca 64  Q
    |||||||  |||||||||||||||||||||||| || || | |||||||| ||||||    
T  27495549 tcagttggtaggacaatgcattattatatgcaggggttgagattcgaaccccgaaca 27495605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 32891288 - 32891324
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  32891288 tagctcagttggtaggacaatgcattattatatgcag 32891324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 6978831 - 6978922
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||  |||| ||||||||||||||||||| || ||||||||||||| |||||||| |||||||| |  ||||| |||| |||||||||    
T  6978831 tcagttgataggataatgcattattatatgcaggggttggggttcgaaccacgaacactccatttattcaccttataaagtgaattctagcc 6978922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 6064398 - 6064455
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| |||||||| |||||    
T  6064398 ggacaatgcattattatatgcaggggtcggggttcgaacctcggacacttcacttatt 6064455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 43847709 - 43847770
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  43847709 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccgaacac 43847770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 23857412 - 23857316
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtggg-tggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  |||||||||||||||||||||||| |||  ||||||||||||||| ||||   | ||||| || |||||| ||| |||||||||    
T  23857412 tagctcagttggtaggacaatgcattattatatgcagggggccggggttcgaacctcggacacccgacttattcatcttatacggtgaattctagcc 23857316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 5184975 - 5184922
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||| |||||||||||||| || |||||||||||||    
T  5184975 tagctcagttggtaggacaatggattattatatgcaggggctggggttcgaacc 5184922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 7649536 - 7649596
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||| |||  ||||||||||||||||||||| || || |||||||||||||||||||||    
T  7649536 tagctcacttggtaggacaatgcattattatatgtag-ggctggggttcgaacctcgaacac 7649596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 9524964 - 9525017
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  9524964 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 9525017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 10970273 - 10970334
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||| ||||||||||||||||||| || |||||||| |||| |||||||    
T  10970273 tagctcagttggtaggataatgcattattatatgcaggggctggggttcaaaccccgaacac 10970334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 15042453 - 15042400
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  15042453 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 15042400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 24608571 - 24608518
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  24608571 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 24608518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 6970718 - 6970674
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaa 62  Q
    |||||||||||||||||||||||  | ||||||||||||||||||    
T  6970718 ggacaatgcattattatatgcagaagttggggttcgaacctcgaa 6970674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 25119228 - 25119268
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  25119228 aggacaatgcattattatatgcaggggttggggttcgaacc 25119268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 25139971 - 25139915
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaaca 64  Q
    |||||||| || ||||||||||||||||||||| ||  |||||||||||| ||||||    
T  25139971 tcagttgttagaacaatgcattattatatgcaggggtcggggttcgaaccccgaaca 25139915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 30942674 - 30942626
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  30942674 aggacaatgcattattatatgcaggggccggggttcgaaccccgaacac 30942626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 1588788 - 1588835
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  1588788 ggacaatgcattattatatgcaggggccggggttcgaacctcggacac 1588835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 39484458 - 39484407
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaa 55  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||    
T  39484458 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaa 39484407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 2376538 - 2376596
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||||||||||||||| ||   |||||||||||||| ||||| || |||||    
T  2376538 aggacaatgcattattatatgcaggggtccgggttcgaacctcggacactccacttatt 2376596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 24074514 - 24074584
Alignment:
Q  5 agctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||||  ||||||||||||||||||||| || || ||  |||||||||||| |||| ||| |||||    
T  24074514 agctcagttggtaggacaatgcattattatatgtaggggttgaagttcgaacctcggacacctcacttatt 24074584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 4798629 - 4798576
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||| ||||||||||||||||||| ||  ||||||||||||    
T  4798629 tagctcagttggtaggataatgcattattatatgcaggggccggggttcgaacc 4798576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 17980289 - 17980342
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||| |||||||||||||||| ||  ||||||||||||    
T  17980289 tagctcagttggtaggacaaagcattattatatgcaggggccggggttcgaacc 17980342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 28465625 - 28465670
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtgggg 49  Q
    |||||||||||  |||||||||||||||||||||||| || |||||    
T  28465625 tagctcagttggtaggacaatgcattattatatgcaggggctgggg 28465670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 42523916 - 42523883
Alignment:
Q  1 acttagctcagttgtgaggacaatgcattattat 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  42523916 acttagctcagttgttaggacaatgcattattat 42523883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 42761938 - 42761901
Alignment:
Q  19 gacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  42761938 gacaatgcattattatatgcagggggcggggttcgaac 42761901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 7603751 - 7603787
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcg 53  Q
    |||||||||||||||||||||||||||  ||||||||    
T  7603751 aggacaatgcattattatatgcagtggtcggggttcg 7603787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8034550 - 8034598
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||||  |  |||||||||||| |||||||    
T  8034550 aggacaatgcattattatatgcaggagccggggttcgaaccccgaacac 8034598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 10199817 - 10199777
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  10199817 aggacaatgcattattatatgcaggggccggggttcgaacc 10199777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 26703975 - 26703907
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||  |||||||||||||||||||||||  ||  |||||||||| | ||||||| ||| |||||    
T  26703975 ctcagttggtaggacaatgcattattatatgcaagggtcggggttcgaatcccgaacacctcacttatt 26703907  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 34365746 - 34365837
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||  |||||||||||||||||| ||||| ||  ||||||||||||||||||||| || ||||| || ||||| |||| |||||||||    
T  34365746 tcagttggtaggacaatgcattattatgtgcaggggccggggttcgaacctcgaacactccacttattcatcttataaagtgaattctagcc 34365837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 10377212 - 10377151
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  10377212 tagctcagttggtaggacaatgcattattatatgcagaggccggggttcgaaccccgaacac 10377151  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 19165358 - 19165411
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  19165358 tagctcagttggtaggacaatgcattattatatgcagaggttggggttcgaacc 19165411  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 9438312 - 9438362
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  9438312 ctcagttggtaggacaatgcattattatatgcaggggttggggttcgaacc 9438362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 18244100 - 18244047
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  18244100 tagctcagttggtaggacaatgcattattatatgcagaggtcggggttcgaacc 18244047  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 32057041 - 32057094
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||||||  | ||||||||||    
T  32057041 tagctcagttgataggacaatgcattattatatgcagtggtcgaggttcgaacc 32057094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 12089104 - 12089157
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  || |||||||||    
T  12089104 tagctcagttggtaggacaatgcattattatatgcaggggccggagttcgaacc 12089157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 19642635 - 19642582
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||  ||  ||||||||||||    
T  19642635 tagctcagttggtaggacaatgcattattatatgcatcggtcggggttcgaacc 19642582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 35190770 - 35190831
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  || ||||||||||||||||||||| ||  || ||||||||| |||||||    
T  35190770 tagctcagttggtagaacaatgcattattatatgcaggggtcggagttcgaaccccgaacac 35190831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 11520743 - 11520795
Alignment:
Q  23 atgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||| |||||||||||||  |||||||||||  ||||||| |||||||||    
T  11520743 atgcattcttatatgcagtggccggggttcgaactccgaacacatcatttatt 11520795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 12127997 - 12127961
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  12127997 tagctcagttggtaggacaatgcattattatatgcag 12127961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 22389838 - 22389802
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  22389838 tagctcagttggtaggacaatgcattattatatgcag 22389802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 22501025 - 22501061
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  22501025 tagctcagttggtaggacaatgcattattatatgcag 22501061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 23771040 - 23771092
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    ||||||| |||  |||||||||||||||||||||||| ||  |||||||||||    
T  23771040 tagctcaattggtaggacaatgcattattatatgcaggggaaggggttcgaac 23771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 33944448 - 33944356
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    ||||||||  |||| ||||||||||||||||||| ||  ||||||||||||||||| ||| || ||||| ||||||||  ||| |||||||||    
T  33944448 ctcagttggtaggataatgcattattatatgcaggggccggggttcgaacctcgaatactccacttattcattttataaggtgaattctagcc 33944356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 9172456 - 9172398
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||  |||||||||||||||||||||||| ||  ||||||||||||||||||||    
T  9172456 ctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctcgaacac 9172398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 53698068 - 53697974
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagc 98  Q
    |||||||||||| |||||||||||||||||||||||| ||  |||||||||||| || ||||  || |||||||  |||||  ||| ||||||||    
T  53698068 tagctcagttgttaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttatttaccttataaggtgaattctagc 53697974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 32885695 - 32885756
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| ||  || |||||||||||| ||||    
T  32885695 tagctcagttggtaggacaatgcattattatatgcaggggtcggagttcgaacctcggacac 32885756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 47018034 - 47017981
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  47018034 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 47017981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 6053987 - 6054039
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||    
T  6053987 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaac 6054039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 20181218 - 20181298
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    |||||||||||  ||||||||||| ||||||||| || ||  |||||||||| |||  |||| ||||||||| ||||||||    
T  20181218 tagctcagttggtaggacaatgcagtattatatgtaggggtaggggttcgaatctcagacacctcatttattaattttata 20181298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 51077875 - 51077935
Alignment:
Q  5 agctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||  |||||||||||||||||||||||| ||  || ||||||| |||||||||    
T  51077875 agctcagttggtaggacaatgcattattatatgcaggggtcggagttcgaatctcgaacac 51077935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 34773767 - 34773676
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||  |||||||||||||||||||||||| || || |||||||||| || ||||  || ||||| | ||||||  ||| |||||||||    
T  34773767 tcagttgataggacaatgcattattatatgcaggggctgaggttcgaaccccggacaccccacttattcactttataaggtgaattctagcc 34773676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 48501732 - 48501685
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||| |||||||||||||| || |||||||||||| ||||||||    
T  48501732 ggacaatgtattattatatgcaggggctggggttcgaacatcgaacac 48501685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 52560771 - 52560842
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||| |||  |||||||||||||||||||||||| ||  |||||||||||| |  |||||||| |||||    
T  52560771 tagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaaccacatacacttcacttatt 52560842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 53815717 - 53815756
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  53815717 ggacaatgcattattatatgcaggggctggggttcgaacc 53815756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Complemental strand, 6637794 - 6637716
Alignment:
Q  20 acaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagc 98  Q
    ||||| ||||||||||||||| || ||||||||||||| |||||||  || ||||| || |||||  ||| ||||||||    
T  6637794 acaatacattattatatgcaggggttggggttcgaaccccgaacaccccacttattcatcttataaggtgaattctagc 6637716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 35333063 - 35333005
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||||||||||||||||||  || ||||||||  |||||||  ||||||||    
T  35333063 aggacaatgcattattatatgcagtggccggagttcgaactccgaacaccccatttatt 35333005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 43327400 - 43327318
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||| ||||||||||||||||||| |||| ||||||||||| || ||||  || |||||||  ||||| |||| ||| |||||    
T  43327400 aggataatgcattattatatgcagggggttgggttcgaaccccgcacaccccacttatttaccttataaagtgaattttagcc 43327318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 3544520 - 3544467
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||  ||  ||||||||||||    
T  3544520 tagctcagttggtaggacaatgcattattatatgcaaaggccggggttcgaacc 3544467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 5635196 - 5635249
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||| ||||    
T  5635196 tagctcagttgctaggacaatgcattattatatgcaggggtcggggttcaaacc 5635249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 9285747 - 9285694
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||| |||  |||||||||||||||||||||||| |  |||||||||||||    
T  9285747 tagctcaattggtaggacaatgcattattatatgcagggtctggggttcgaacc 9285694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 13211436 - 13211364
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggt-ggggttcgaacctcgaacacttcatttatttattt 80  Q
    |||||||  ||||||||||||||||||||||| ||||| |||||||||||| || ||||| || ||||| ||||    
T  13211436 tcagttggtaggacaatgcattattatatgca-tgggtcggggttcgaaccccggacactccacttattcattt 13211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 23661446 - 23661385
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  ||||||||||||| ||||||| || ||  |||||||||||| |||||||    
T  23661446 tagctcagttgctaggacaatgcattgttatatgtaggggtaggggttcgaaccccgaacac 23661385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 26708625 - 26708585
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctc 59  Q
    ||||||||||||||||||||||| |||| |||||||||||||    
T  26708625 ggacaatgcattattatatgcag-gggttgggttcgaacctc 26708585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 75
Target Start/End: Original strand, 27296827 - 27296900
Alignment:
Q  3 ttagctcagttgtgagga-caatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||||||  |||| ||||||||||||||||  || || ||||||||||||| ||||||  |||||||||    
T  27296827 ttagctcagttggcaggaacaatgcattattatatataggggttggggttcgaaccccgaacatctcatttatt 27296900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 36954158 - 36954215
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||||||||||||||||| ||  |||||||||||| || ||||  ||||||||    
T  36954158 ggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccatttatt 36954215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 56546537 - 56546484
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||| |||  |||||||||||||||||||||||| ||  ||||||||||||    
T  56546537 tagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaacc 56546484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 4722552 - 4722516
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  4722552 tagctcagttggtaggacaatgcattattatatgcag 4722516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 8690234 - 8690274
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  8690234 aggacaatgcattattatatgcaggggtcggggttcgaacc 8690274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 15640516 - 15640476
Alignment:
Q  19 gacaatgcattattatatgcagtgggtggggttcgaacctc 59  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  15640516 gacaatgcattattatatgcagtgttcggggttcgaacctc 15640476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 35031390 - 35031426
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  35031390 tagctcagttggtaggacaatgcattattatatgcag 35031426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 43606188 - 43606152
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  43606188 tagctcagttgataggacaatgcattattatatgcag 43606152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 50657887 - 50657923
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  50657887 tagctcagttggtaggacaatgcattattatatgcag 50657923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 11802105 - 11802037
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||  ||||||||||||||||||||| || || ||||||||||||| || ||||||||||||||    
T  11802105 ctcagttggtaggacaatgcattattatatgtaggggttggggttcgaaccccggacacttcatttatt 11802037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 4429570 - 4429475
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  |||||||||||||||||||||||| || |||||||||||||  ||||| | || ||||| || |||||  ||| |||||||||    
T  4429570 tagctcagttggtaggacaatgcattattatatgcaggggttggggttcgaaccctgaacattccacttattcatcttataaggtgaattctagcc 4429475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 15368812 - 15368907
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||| || ||||  || ||||| ||||||||  ||| |||||||||    
T  15368812 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccacttattcattttataaggtgaattctagcc 15368907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 37733762 - 37733815
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||||||  ||||||||||||    
T  37733762 tagctcagttggtaggacaatgcattattatatgcagtggacggggttcgaacc 37733815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 16110108 - 16110016
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattcta 96  Q
    |||||||||||  |||||||||||||||||||||||| || || |||||||||| | || ||| || ||||| ||| |||| |||| ||||||    
T  16110108 tagctcagttgataggacaatgcattattatatgcaggggttgaggttcgaaccccaaagactccacttattcattctataaagtgaattcta 16110016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 48110536 - 48110616
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    |||||||||||  || ||||||||||||||||||||| || ||| |||||||||||| |||| ||| ||||| || |||||    
T  48110536 tagctcagttggtagaacaatgcattattatatgcaggggttggagttcgaacctcggacacctcacttattcatcttata 48110616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 4354193 - 4354098
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||| ||| ||||  || ||||| |  ||||| |||| |||||||||    
T  4354193 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacttcggacaccccacttattcaccttataaagtgaattctagcc 4354098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 17871167 - 17871108
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||  ||| |||||||||||| |||||||    
T  17871167 tagctcagttgataggacaatgcattattatatgca--gggcggggttcgaaccccgaacac 17871108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 20357470 - 20357520
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  20357470 ctcagttggtaggacaatgcattattatatgcaggggctggggttcgaacc 20357520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 20562485 - 20562435
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  20562485 ctcagttggtaggacaatgcattattatatgcaggggctggggttcgaacc 20562435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 11907376 - 11907329
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  11907376 ggacaatgcattattatatgcagaggccggggttcgaaccccgaacac 11907329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 23930628 - 23930537
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||  |||||||||||||||||||||||| ||  ||||||||||||  | ||||  ||||||||||  ||||| |||| | |||||||    
T  23930628 tcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccctggacaccccatttatttaccttataaagtgaactctagcc 23930537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 43020637 - 43020679
Alignment:
Q  23 atgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||||||||| || |||||||||||||||| ||||    
T  43020637 atgcattattatatgcaggggttggggttcgaacctcggacac 43020679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 49251480 - 49251430
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  49251480 ctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacc 49251430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 18923973 - 18923912
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| |    |||||||||||||| ||||    
T  18923973 tagctcagttggtaggacaatgcattattatatgcagggttcagggttcgaacctcggacac 18923912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 23464070 - 23464021
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  23464070 tcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 23464021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 42831954 - 42832007
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||| ||||||||||||||||| || |||||||| ||||    
T  42831954 tagctcagttggtaggacattgcattattatatgcaggggctggggttcaaacc 42832007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 46116262 - 46116209
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||| |||||  ||||||||||||||| |||||||| || |||||||||||||    
T  46116262 tagcttagttggtaggacaatgcattatcatatgcaggggctggggttcgaacc 46116209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 49606786 - 49606753
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatg 37  Q
    |||||||||||| |||||||||||||||||||||    
T  49606786 tagctcagttgttaggacaatgcattattatatg 49606753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 5172690 - 5172654
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  5172690 tagctcagttgataggacaatgcattattatatgcag 5172654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Complemental strand, 17056955 - 17056915
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||||||||||||||| ||  ||||||||||||    
T  17056955 aggacaatgcattattatatgcaggggccggggttcgaacc 17056915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 30649101 - 30649153
Alignment:
Q  5 agctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||||  ||||||| ||||||||||||||||  | |||||||||||||    
T  30649101 agctcagttgataggacaacgcattattatatgcaggagttggggttcgaacc 30649153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 38020036 - 38020000
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  38020036 tagctcagttggtaggacaatgcattattatatgcag 38020000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 43555962 - 43555926
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  43555962 tagctcagttggtaggacaatgcattattatatgcag 43555926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 27047803 - 27047732
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||||| ||||  ||||||||    
T  27047803 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccatttatt 27047732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 30699822 - 30699870
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||| || || |||||||||||||||||||||    
T  30699822 aggacaatgcattattatatgtaggggttggggttcgaacctcgaacac 30699870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 7263086 - 7262991
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  ||||||||||||||||||||| || || ||| ||||||||| |||||||   ||||||| || |||||  ||| |||||||||    
T  7263086 tagctcagttggtaggacaatgcattattatatgtagaggttggagttcgaaccccgaacaccctatttattcatcttataaggtgaattctagcc 7262991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 23685642 - 23685589
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  23685642 tagctcagttgataggacaatgcattattatatgcaggggccggggttcgaacc 23685589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 34962060 - 34962007
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||||||||||||||||||| | |||| ||||||||    
T  34962060 tagctcagttggtaggacaatgcattattatatgcagtagctgggattcgaacc 34962007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 36316062 - 36316001
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||| ||||||||||||||||||| ||  ||||||||||||||| ||||    
T  36316062 tagctcagttggtaggataatgcattattatatgcaggggccggggttcgaacctcggacac 36316001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 46716340 - 46716393
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  46716340 tagctcagttggtaggacaatgcattattatatgcagaggtcggggttcgaacc 46716393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 25818296 - 25818364
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||  |||| ||||||||||||||||||| || ||| ||||||||| |||||||| || |||||    
T  25818296 ctcagttggtaggataatgcattattatatgcaggggctggagttcgaaccccgaacactccacttatt 25818364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 38025348 - 38025404
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcg 60  Q
    ||||||| |||  ||||||||||||||||||||||||  | ||||||||||||||||    
T  38025348 tagctcatttgataggacaatgcattattatatgcaggagttggggttcgaacctcg 38025404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Original strand, 30152746 - 30152809
Alignment:
Q  2 cttagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||||  ||||||||||||||||||||  || ||  |||||||||||| |||||||    
T  30152746 cttagctcagttggtaggacaatgcattattatatataggggtcggggttcgaaccccgaacac 30152809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 43970938 - 43970880
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||  || |||||||||||||||||||||  |  ||||||||||||||||||||    
T  43970938 ctcagttggtagaacaatgcattattatatgcagaagacggggttcgaacctcgaacac 43970880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 2366367 - 2366416
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    ||||||||  |||||||||||||||||||||||| ||  |||||||||||    
T  2366367 ctcagttgataggacaatgcattattatatgcaggggtcggggttcgaac 2366416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 22047527 - 22047568
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggt 45  Q
    |||||||||||  |||||||||||||||||||||||| ||||    
T  22047527 tagctcagttggtaggacaatgcattattatatgcagggggt 22047568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 30644176 - 30644229
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  || |||||||||    
T  30644176 tagctcagttggtaggacaatgcattattatatgcaggggccggtgttcgaacc 30644229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 34948113 - 34948166
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||||||||| |||||||||||  | ||||||||||    
T  34948113 tagctcagttggtaggacaatgcattatcatatgcagtggccgaggttcgaacc 34948166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 41139108 - 41139165
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    ||||||||||||||||||||||| ||  |||||||||| | || |||||||| |||||    
T  41139108 ggacaatgcattattatatgcaggggtcggggttcgaatcccggacacttcacttatt 41139165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 44437913 - 44437860
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||||   |||||||||||||||||||||||| ||  ||||||||||||    
T  44437913 tagctcagttagtaggacaatgcattattatatgcaggggccggggttcgaacc 44437860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 47552220 - 47552273
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||  ||  ||||||||||||    
T  47552220 tagctcagttggtaggacaatgcattattatatgcaagggccggggttcgaacc 47552273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 4590694 - 4590658
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  4590694 tagctcagttggtaggacaatgcattattatatgcag 4590658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 21086111 - 21086147
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  21086111 tagctcagttggtaggacaatgcattattatatgcag 21086147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 35195869 - 35195921
Alignment:
Q  23 atgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||||||||| ||  |||||||||||| |||||||  ||||||||    
T  35195869 atgcattattatatgcaggggccggggttcgaaccccgaacaccccatttatt 35195921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 16854 - 16914
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| |||| ||||||||||| |||||||    
T  16854 tagctcagttggtaggacaatgcattattatatgcag-gggtcgggttcgaaccccgaacac 16914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 43784 - 43724
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| |  |||||||||||||||||||||    
T  43784 tagctcagttggtaggacaatgcattattatatgcag-gactggggttcgaacctcgaacac 43724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 18872528 - 18872589
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  18872528 tagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccgaacac 18872589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 27440386 - 27440325
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||||||||||||||||||||||  | |||||||||| |||||||    
T  27440386 tagctcagttggtaggacaatgcattattatatgcagtggtcgaggttcgaaccccgaacac 27440325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 32158504 - 32158441
Alignment:
Q  2 cttagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||| |||  |||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  32158504 cttagctcaattggtaggacaatgcattattatatgcaggggccggggttcgaaccccgaacac 32158441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 3102201 - 3102120
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||| ||||||| ||  |  |||||||||||| |||||||  |||||||||| |||||| |||| |||||||||    
T  3102201 ggacaatgcattgttatatgtaggagtcggggttcgaaccccgaacaccccatttatttactttataaagtgaattctagcc 3102120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 21017694 - 21017641
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||||||||||||||| ||||| ||||||| |||||    
T  21017694 tagctcagttggtaggacaatgcattattatatgtagtggctggggtttgaacc 21017641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 14487572 - 14487624
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcg 60  Q
    |||||||  ||||||||||||||||||||| || || ||||||||||||||||    
T  14487572 tcagttggtaggacaatgcattattatatgtaggggttggggttcgaacctcg 14487624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 19982336 - 19982256
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    |||||| ||||  |||| ||||||||||||||||||| || ||  ||||||||| |||||||  ||||||||||| |||||    
T  19982336 tagctcggttgataggataatgcattattatatgcaggggttgaagttcgaaccccgaacaccccatttatttatcttata 19982256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 6447554 - 6447507
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  6447554 ggacaatgcattattatatgcaggggccggggttcgaacctcggacac 6447507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 75
Target Start/End: Complemental strand, 42455482 - 42455411
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||  |||||||||||||||||||||||| ||  || ||||||||| || ||||| || |||||    
T  42455482 tagctcagttggtaggacaatgcattattatatgcaggggccggagttcgaaccccggacactccacttatt 42455411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 7147088 - 7147034
Alignment:
Q  23 atgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttattta 77  Q
    |||||||||||||||||| ||  ||||||||||||||  |||| |||||||||||    
T  7147088 atgcattattatatgcaggggtcggggttcgaacctctgacacctcatttattta 7147034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 26169097 - 26169047
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| || ||| |||||||||    
T  26169097 ctcagttggtaggacaatgcattattatatgcaggggttggagttcgaacc 26169047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 33800903 - 33800953
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  33800903 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 33800953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 40339187 - 40339133
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacct 58  Q
    ||||||||||   |||||||||||||||||||||||| ||  |||||||||||||    
T  40339187 tagctcagttagtaggacaatgcattattatatgcaggggccggggttcgaacct 40339133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 6614110 - 6614065
Alignment:
Q  20 acaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||| ||  ||||||||||||||| ||||    
T  6614110 acaatgcattattatatgcaggggccggggttcgaacctcggacac 6614065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 18478010 - 18478063
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||| | ||  ||||||||||||    
T  18478010 tagctcagttggtaggacaatgcattattatatgctggggccggggttcgaacc 18478063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 19059092 - 19059039
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  ||||||||||||||| |||||||| ||  ||||||||||||    
T  19059092 tagctcagttggtaggacaatgcattatcatatgcaggggccggggttcgaacc 19059039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 29050807 - 29050843
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  29050807 tagctcagttggtaggacaatgcattattatatgcag 29050843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 33729788 - 33729836
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaa 55  Q
    ||||||||  |||||||||||||||||||||||| ||  ||||||||||    
T  33729788 ctcagttggtaggacaatgcattattatatgcaggggccggggttcgaa 33729836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 84
Target Start/End: Complemental strand, 42801529 - 42801449
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    |||||||||||  | || ||||||||||||||||||| ||  |||||||||||| || |||| ||| ||||| || |||||    
T  42801529 tagctcagttggtatgataatgcattattatatgcaggggtcggggttcgaaccccggacacctcacttattcatcttata 42801449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 33206764 - 33206817
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| || |||||||||||||    
T  33206764 tagctcagttggtaggacaatgcattattatatgcaggggctggggttcgaacc 33206817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 50724375 - 50724435
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||| | ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  50724375 tagctcagttg-gtggacaatgcattattatatgcaggggttggggttcgaacctcggacac 50724435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 50788473 - 50788413
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||| | ||||||||||||||||||||||| || |||||||||||||||| ||||    
T  50788473 tagctcagttg-gtggacaatgcattattatatgcaggggttggggttcgaacctcggacac 50788413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 13540052 - 13539957
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  ||||||||||||||||||||| || || ||||||||||||| || ||||  || |||||||  |||||  ||| |||||||||    
T  13540052 tagctcagttggtaggacaatgcattattatatgtaggggttggggttcgaaccccggacaccccacttatttaccttataaggtgaattctagcc 13539957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 43566884 - 43566829
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctc 59  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||||    
T  43566884 tagctcagttggtaggacaatgcattattatatgcaggggtcggggttcgaacctc 43566829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 19540348 - 19540409
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  |||||||| |||||||||||||||  | ||||||||||||| |||||||    
T  19540348 tagctcagttggtaggacaatacattattatatgcaggagctggggttcgaaccccgaacac 19540409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 20244141 - 20244194
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||||||  |||||||||||||||||||||||| ||  ||||||||||||    
T  20244141 tagctcagttggtaggacaatgcattattatatgcaggggccggggttcgaacc 20244194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 99
Target Start/End: Original strand, 49146089 - 49146186
Alignment:
Q  2 cttagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||| ||||||||  |||||||||||||||||||||||| ||  |||||||||||| || ||||  || ||||| | ||||||  ||| |||||||||    
T  49146089 cttaactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttataaggtgaattctagcc 49146186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 49639035 - 49639096
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||||||  ||||||||||||||||||||| || ||  |||||||||||| |||||||    
T  49639035 tagctcagttggtaggacaatgcattattatatgtaggggccggggttcgaaccccgaacac 49639096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 65
Target Start/End: Original strand, 53467960 - 53468016
Alignment:
Q  8 tcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    |||||||  |||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  53467960 tcagttggtaggacaatgcattattatatgcag-gggcggggttcgaacctcggacac 53468016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 38555100 - 38555045
Alignment:
Q  19 gacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||||||||||||| |||| ||||||||||||| ||||| ||| |||||    
T  38555100 gacaatgcattattatatgcag-gggtcgggttcgaacctcaaacacctcacttatt 38555045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 39492833 - 39492881
Alignment:
Q  9 cagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||| |||||||||||||||||||||||  || |||||||||||||    
T  39492833 cagttgttaggacaatgcattattatatgcatgggctggggttcgaacc 39492881  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 40786287 - 40786342
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggt-ggggttcgaacctc 59  Q
    |||||||||||  ||||||||||||||||||||||| ||||| ||||||||||||||    
T  40786287 tagctcagttggtaggacaatgcattattatatgca-tgggtcggggttcgaacctc 40786342  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 14868706 - 14868753
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||| ||  |||||||||||| |||||||    
T  14868706 ggacaatgcattattatatgcaggggccggggttcgaaccccgaacac 14868753  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 35849367 - 35849312
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctc 59  Q
    |||||||||||  |||||||||||||||||||||||| |  || ||||||||||||    
T  35849367 tagctcagttggtaggacaatgcattattatatgcagggactgtggttcgaacctc 35849312  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 36727550 - 36727456
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||||||||||  |||||||||||||||||||||||  ||  ||||||||||||||| ||||  || ||||| || |||||  ||| |||||||||    
T  36727550 tagctcagttggtaggacaatgcattattatatgca-aggtcggggttcgaacctcggacaccccacttattcatcttataaggtgaattctagcc 36727456  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 47191394 - 47191441
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||||| || ||| ||||||||| |||||||    
T  47191394 ggacaatgcattattatatgcaggggctggagttcgaaccccgaacac 47191441  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 31698553 - 31698635
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    |||| |||||||||||||||||||  |  ||||||||||||||||||||  || ||||| || |||||  ||| |||||||||    
T  31698553 aggataatgcattattatatgcaggagccggggttcgaacctcgaacaccccacttattcatcttataaggtgaattctagcc 31698635  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 32508879 - 32508821
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||  |||| ||||||||||||||||||| ||  |||||||||||| |||||||    
T  32508879 ctcagttgataggataatgcattattatatgcaggggtcggggttcgaaccccgaacac 32508821  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 14417875 - 14417928
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||| |||  |||||||||||||||||||||||| || ||| |||||||||    
T  14417875 tagctcaattggtaggacaatgcattattatatgcaggggctggagttcgaacc 14417928  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 40
Target Start/End: Complemental strand, 21420278 - 21420241
Alignment:
Q  3 ttagctcagttgtgaggacaatgcattattatatgcag 40  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  21420278 ttagctcagttggtaggacaatgcattattatatgcag 21420241  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 24751348 - 24751295
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||||   |||||||||||||||||||||||| ||  ||||||||||||    
T  24751348 tagctcagttagtaggacaatgcattattatatgcaggggccggggttcgaacc 24751295  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 28226259 - 28226214
Alignment:
Q  20 acaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||| || ||||||||||| | |||||||    
T  28226259 acaatgcattattatatgcaggggttggggttcgaatcccgaacac 28226214  T

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Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 99
Target Start/End: Complemental strand, 36331800 - 36331719
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctagcc 99  Q
    ||||||||||||||||||||||| ||  |||||||||||| || ||||  || ||||| | |||| | |||| |||||||||    
T  36331800 ggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaaagtgaattctagcc 36331719  T

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Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 84
Target Start/End: Complemental strand, 55195946 - 55195869
Alignment:
Q  7 ctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttata 84  Q
    ||||||||  ||||||||||||||| ||||| || || ||| ||||||||  ||||||| ||||||||| || |||||    
T  55195946 ctcagttgataggacaatgcattatcatatgtaggggttggagttcgaactccgaacacctcatttattcatcttata 55195869  T

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Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 34136770 - 34136822
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    |||||||||||  || |||||||||||||||||| || || ||||||||||||    
T  34136770 tagctcagttggtagaacaatgcattattatatgtaggggttggggttcgaac 34136822  T

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Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 34344865 - 34344829
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  34344865 tagctcagttgataggacaatgcattattatatgcag 34344829  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 34503222 - 34503258
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcag 40  Q
    |||||||||||  ||||||||||||||||||||||||    
T  34503222 tagctcagttggtaggacaatgcattattatatgcag 34503258  T

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Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 42271101 - 42271049
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaac 56  Q
    |||||||||||  ||||||||||||| |||||||||| ||  |||||||||||    
T  42271101 tagctcagttggtaggacaatgcattgttatatgcaggggccggggttcgaac 42271049  T

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Target: scaffold0178 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 4330 - 4423
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatttattttatacagtgtattctag 97  Q
    |||||||||||  |||||||| ||||||||||||||| ||  |||||||||||| || ||||| || ||||| | ||||||  ||| |||||||    
T  4330 tagctcagttgataggacaatacattattatatgcaggggtcggggttcgaaccccggacactccacttattcactttataaggtgaattctag 4423  T

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Target: scaffold0343 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 8580 - 8628
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaacctcgaacac 65  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||||    
T  8580 aggacaatgcattattatatgtaggggttggggttcgaaccccgaacac 8628  T

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Target: scaffold0308 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 7082 - 7154
Alignment:
Q  4 tagctcagttgtgagg-acaatgcattattatatgcagtgggtggggttcgaacctcgaacacttcatttatt 75  Q
    |||||||||||| ||| ||||||||||||||||||||| ||  |||||||||||| || ||||  ||||||||    
T  7082 tagctcagttgttagggacaatgcattattatatgcaggggccggggttcgaaccccggacaccccatttatt 7154  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 25047 - 25086
Alignment:
Q  18 ggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    ||||||||||||||||||||||| || |||||||||||||    
T  25047 ggacaatgcattattatatgcaggggctggggttcgaacc 25086  T

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Target: scaffold1990 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1990
Description:

Target: scaffold1990; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 914 - 952
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaa 55  Q
    |||||||||||||||||||||||| || |||||||||||    
T  914 aggacaatgcattattatatgcaggggctggggttcgaa 952  T

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Target: scaffold0092 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 47392 - 47354
Alignment:
Q  17 aggacaatgcattattatatgcagtgggtggggttcgaa 55  Q
    |||||||||||||||||||||||| || |||||||||||    
T  47392 aggacaatgcattattatatgcaggggctggggttcgaa 47354  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 7106 - 7053
Alignment:
Q  4 tagctcagttgtgaggacaatgcattattatatgcagtgggtggggttcgaacc 57  Q
    |||||||| ||  |||||||||||||||||||||||| ||  ||||||||||||    
T  7106 tagctcagctggtaggacaatgcattattatatgcaggggcgggggttcgaacc 7053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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