View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_25 (Length: 220)

Name: NF0813_low_25
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_25
NF0813_low_25
[»] chr5 (11 HSPs)
chr5 (30-126)||(38443919-38444015)
chr5 (29-102)||(38170275-38170351)
chr5 (29-102)||(38452559-38452635)
chr5 (30-102)||(38220719-38220794)
chr5 (29-102)||(38182250-38182326)
chr5 (29-102)||(38186062-38186138)
chr5 (29-102)||(38188805-38188881)
chr5 (29-102)||(38209476-38209552)
chr5 (29-102)||(38212219-38212295)
chr5 (29-102)||(38216030-38216106)
chr5 (64-102)||(38156397-38156435)


Alignment Details
Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 30 - 126
Target Start/End: Original strand, 38443919 - 38444015
Alignment:
Q  30 aattgtatggattcaaatttattaatatattgattttttatcatggatttgtctcatatatttcttccacttaattatctctcctatatgttgttaa 126  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38443919 aattgtatggattcaaatttattaatatattggttttttatcatggatctgtctcatatatttcttccacttaattatctctcctatatgttgttaa 38444015  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38170275 - 38170351
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38170275 aaattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta 38170351  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38452635 - 38452559
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38452635 aaattgtacggattcaaattgattaatatattggttcttttttatcatggatttgtctcctatatttcttgcactta 38452559  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 38220719 - 38220794
Alignment:
Q  30 aattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    ||||||| ||||||||||| |||||||||||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38220719 aattgtacggattcaaattgattaatatattggttctattttatcatggatttgtctcctatatttcttgcactta 38220794  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38182326 - 38182250
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38182326 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38182250  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38186062 - 38186138
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38186062 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38186138  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38188805 - 38188881
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38188805 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38188881  T

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Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38209552 - 38209476
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38209552 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38209476  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Complemental strand, 38212295 - 38212219
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38212295 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38212219  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 38216030 - 38216106
Alignment:
Q  29 aaattgtatggattcaaatttattaatatattgatt---ttttatcatggatttgtctcatatatttcttccactta 102  Q
    |||||||| ||||||||||| ||||||| |||| ||   |||||||||||||||||||| |||||||||| ||||||    
T  38216030 aaattgtacggattcaaattgattaatacattggttcttttttatcatggatttgtctcctatatttcttgcactta 38216106  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 38156397 - 38156435
Alignment:
Q  64 tttttatcatggatttgtctcatatatttcttccactta 102  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  38156397 tttttatcatggatttgtctcctatatttcttgcactta 38156435  T

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