View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0813_low_6 (Length: 489)
Name: NF0813_low_6
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0813_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 86 - 460
Target Start/End: Complemental strand, 24812271 - 24811897
Alignment:
| Q |
86 |
caaaggaaactacatggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttga |
185 |
Q |
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| T |
24812271 |
caaaggaaactacatggaatcgcgtccaatatgatgcgattagataagcttaagttccatttcatgaatgatatacaaaatgtcatgatccaaactttga |
24812172 |
T |
|
| Q |
186 |
gcaatttcaaaaaccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacatttttattttcaattatgagaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24812171 |
gcaatttcaaaaaccaacaagtaattcttctccaagatgtttgtagaaaggtaacgatccatttactttctaacaacattttcattttcaattatgagaa |
24812072 |
T |
|
| Q |
286 |
atttatcgcggaacatgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcag |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24812071 |
atttatcgcggaacatgatttaatgcaggtagctataaatttaatggttaatcaactattaggggtttcaagtgagtctcaagtcaatgaaatggctcag |
24811972 |
T |
|
| Q |
386 |
ttgttttccgatttcgttgatggctgtctatccgttccgatcaacatccctggatcttcataccacactgctatg |
460 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24811971 |
ttgttttccgatttcgttgatggctgtctatctgttccgatcaacatccctggctcttcataccacactgctatg |
24811897 |
T |
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