View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0813_low_8 (Length: 395)

Name: NF0813_low_8
Description: NF0813
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0813_low_8
NF0813_low_8
[»] chr5 (2 HSPs)
chr5 (10-386)||(17388020-17388396)
chr5 (263-342)||(23884339-23884418)
[»] chr7 (1 HSPs)
chr7 (262-342)||(3004675-3004755)
[»] chr1 (1 HSPs)
chr1 (262-342)||(37737667-37737747)
[»] chr8 (1 HSPs)
chr8 (242-306)||(44288614-44288678)
[»] chr6 (2 HSPs)
chr6 (262-306)||(33460983-33461027)
chr6 (262-306)||(34825140-34825184)
[»] chr3 (1 HSPs)
chr3 (262-306)||(37193420-37193464)
[»] chr2 (1 HSPs)
chr2 (262-342)||(23681998-23682078)


Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 17388396 - 17388020
Alignment:
Q  10 ctgtgatatgatgatacctgacttagaatgtgctatttccaatccaagaaagtacttcaactctcctaagtccttgatgcaaaaattaatgtccagaata 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17388396 ctgtgatatgatgatacctgacttagaatgtgctatttccaatccaagaaagtacttcaactctcctaagtccttgatgcaaaaattaatgtccagaata 17388297  T
Q  110 gctttaattctagtaaattcagtgagagatgtacctgcaagtatgacatcatcaacataaatcaagagcgctgtgaattcattatctttgtgaagagtga 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17388296 gctttaattctagtaaattcagtgagagatgtacctgcaagtatgacatcatcaacataaatcaagagcgctgtgaattcattatctttgtgaagagtga 17388197  T
Q  210 ataatgaataatcagcagtcgattgttgatatccttcttgaatcaatagtgctgtcaatttttcataccacttcctacttgcttgctttaaaccatacaa 309  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17388196 ataatgaataatcagcagttgattgttgatatccttcttgaatcaatagtgctgtcaatttttcataccacttcctacttgcttgctttaaaccatacaa 17388097  T
Q  310 gcttttcatcaatttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatacatattctt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  17388096 gcttttcatcaatttacaaacttgatttggttttgtgcatgtgacaccttctggaattgccatatatacatcttctt 17388020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 342
Target Start/End: Original strand, 23884339 - 23884418
Alignment:
Q  263 gtcaatttttcataccacttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttt 342  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||| | |  ||| |||| ||| || || |||||||||||    
T  23884339 gtcaacttttcataccacttcctgcttgcttgctttaatccatagagggatttaatcagtttgcagacctgatttggttt 23884418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 3004755 - 3004675
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttt 342  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||| | |  ||| |||| ||| || || |||||||||||    
T  3004755 tgtcaatttttcttaccacttcctgcttgcttgctttaatccatagagggatttaatcagtttgcatacctgatttggttt 3004675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 37737667 - 37737747
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttt 342  Q
    |||||||||||||||||||||| | |||||||||||||| ||||| | |  ||| |||| ||| || || |||||||||||    
T  37737667 tgtcaatttttcataccacttcatgcttgcttgctttaatccatagagggatttaatcagtttgcatacctgatttggttt 37737747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 44288614 - 44288678
Alignment:
Q  242 ccttcttgaatcaatagtgctgtcaatttttcataccacttcctacttgcttgctttaaaccata 306  Q
    |||| |||||| |||| ||  ||||| ||||||||||||||||| ||||||||||| || |||||    
T  44288614 ccttgttgaattaataatgaagtcaacttttcataccacttcctgcttgcttgcttcaacccata 44288678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 33461027 - 33460983
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccata 306  Q
    |||||| || |||||||| ||||||||||||||||| ||||||||    
T  33461027 tgtcaacttctcataccatttcctacttgcttgcttcaaaccata 33460983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 34825184 - 34825140
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccata 306  Q
    |||||| || |||||||| ||||||||||||||||| ||||||||    
T  34825184 tgtcaacttctcataccatttcctacttgcttgcttcaaaccata 34825140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 37193464 - 37193420
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccata 306  Q
    |||||| || |||||||| ||||||||||||||||| ||||||||    
T  37193464 tgtcaacttctcataccatttcctacttgcttgcttcaaaccata 37193420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 23682078 - 23681998
Alignment:
Q  262 tgtcaatttttcataccacttcctacttgcttgctttaaaccatacaagcttttcatcaatttacaaacttgatttggttt 342  Q
    ||||||| |||||||||||||| | |||||||||||||| ||||| | |  ||| |||| ||| || || |||||||||||    
T  23682078 tgtcaatatttcataccacttcatgcttgcttgctttaatccatagagggatttaatcagtttgcatacatgatttggttt 23681998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4608 times since January 2019
Visitors: 5751