View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814-Insertion-1 (Length: 1130)
Name: NF0814-Insertion-1
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 876; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 876; E-Value: 0
Query Start/End: Original strand, 7 - 935
Target Start/End: Complemental strand, 52263358 - 52262428
Alignment:
| Q |
7 |
agaaacttcacaaactcaatggaacgagtcaccaacaaagaaaacacgtgtatgggctaaggaccgttccaataactggtgggaactat--gtagccacc |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52263358 |
agaaacttcacaaactcaatggaacgagtcaccaacaaagaaaacacgtgtatgggctaaggaccgttccaataactggtgggaactatatgtagccacc |
52263259 |
T |
|
| Q |
105 |
ctgattttccggatgacgaattccagaaatcttttcggatgagcaaagaaacctttgagtttatatgcagagaacttgattcaacagtcaccaagaaaaa |
204 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
52263258 |
ctgattttccggatgacgaattccagaaatcttttcggatgagcaaataaacctttgagtttatatgcagagaacttgattcaactgtcaccaagaaaaa |
52263159 |
T |
|
| Q |
205 |
cacgacgctccgcgacgctgttcctctccggcagcgagtggcggcttgtatttggagacttgccacaggtgatccttataggcttgtttcagaacgattt |
304 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263158 |
cacgacgctccgcgacgctattcctctccggcagcgagtagcggcttgtatttggagacttgccacaggtgatccttataggcttgtttcagaacgattt |
52263059 |
T |
|
| Q |
305 |
ggtttgggtttatccacatgtcacaagctcgttctagatgtttgctctgcaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaata |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52263058 |
ggtttgggtttatccacatgtcacaagctcgttctagatgtttgctctgaaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaata |
52262959 |
T |
|
| Q |
405 |
acatgatattggttaaacaagagtttgagggtctttctggaataccaaatgttggtggttcagtttatactactcatattcccataattgcaccaaactc |
504 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52262958 |
acatgatattggttaaacaagagtttgagggtctttctggaataccaaatgttggtggttcagtttatactactcatattcccataattgcacctaactc |
52262859 |
T |
|
| Q |
505 |
caatgcgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactcttttactgttcagggtgtggttgagtctaaagggatt |
604 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262858 |
caatgtgaattcttattatttcaataaaagacacactcagaggaacaagaaaaattcttactcttttactgttcagggtgtggttgagtctaaagggatt |
52262759 |
T |
|
| Q |
605 |
ttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcggatttgtttaagagaattgtgaagggagatttgaaag |
704 |
Q |
| |
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| T |
52262758 |
ttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgagaaatcggatttgtttaagagaattgtgaagggagatttgaaag |
52262659 |
T |
|
| Q |
705 |
atgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgcgtttaatga |
804 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262658 |
atgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgcgtttaatga |
52262559 |
T |
|
| Q |
805 |
gagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggat |
904 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52262558 |
gaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaaattgaggat |
52262459 |
T |
|
| Q |
905 |
ttgcctaagattttaggtgcttgtcgtgttt |
935 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
52262458 |
ttgcctaagattttaggtgcttgttgtgttt |
52262428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 233 - 910
Target Start/End: Complemental strand, 52251485 - 52250811
Alignment:
| Q |
233 |
cggcagcgagtggcggcttgtatttggagacttgccacaggtgatccttataggcttgtttcagaacgatttggtttgggtttatccacatgtcacaagc |
332 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| ||||| ||||||||| ||||| |||||| | | || ||||||||| ||||||| ||||| |||| |
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|
| T |
52251485 |
cggcagcgcgtggcggtttgtatctggagactcgccaccggtgatcctctaaggctggtttcaaagaggttcggtttgggtatatccacctgtcataagc |
52251386 |
T |
|
| Q |
333 |
tcgttctagatgtttgctctgcaataaaaaccgttcttatgccaaagttcattctatggccagatgaaaataacatgatattggttaaacaagagtttga |
432 |
Q |
| |
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| ||||| || ||||| ||||||| || | ||||||||||||||||| ||| ||||| ||||||||||| |||| ||| |||||||||||||||| |
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| T |
52251385 |
tggttcttgaggtttgtgctgcaatcaagaaagttcttatgccaaagtttattacttggcctgatgaaaataagatgaatttgattaaacaagagtttga |
52251286 |
T |
|
| Q |
433 |
gggtctttctggaataccaaatgttggtggttcagtttatactactcatattcccataattgcaccaaactccaatgcgaattcttattatttcaataaa |
532 |
Q |
| |
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|||||||| |||||| |||||||||||||||||| | ||||| || |||||||| ||||||||||| || ||||| ||||||| ||||||||||| |
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|
| T |
52251285 |
gggtctttttggaatgccaaatgttggtggttcaatgtataccacacatattccaataattgcacctaagaacaatgtgaattct---tatttcaataag |
52251189 |
T |
|
| Q |
533 |
agacacactcagaggaacaagaaaaattcttactcttttactgttcagggtgtggttgagtctaaagggattttcactaacgtgtgtattggttggcctg |
632 |
Q |
| |
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|| || |||||||||||| |||||| | | |||||| |||||||||| ||||||||||| |||||||| |||||||| | || | | |||||| |||| |
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| T |
52251188 |
aggcagactcagaggaaccagaaaactgcatactctgttactgttcaaggtgtggttgatgctaaaggggttttcactgatgtttttcttggttaccctg |
52251089 |
T |
|
| Q |
633 |
gttcttattctgatgaacaggttttcgagaaatcggatttgtttaagagaattgtga-agggagatttgaaagatgcttgggttgctggaaattctgggt |
731 |
Q |
| |
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|||||||| |||||| || ||||| |||||||| | ||| | ||||| | ||| ||||| ||||||||||| ||||||||| |||||||||||||| |
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|
| T |
52251088 |
gttcttataatgatgatcaagttttggagaaatctgtaatgtatcagagagctatgacaggga-atttgaaagattcttgggttgttggaaattctgggt |
52250990 |
T |
|
| Q |
732 |
accctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgcgtttaatgagagggttgaggatattcagaggattgc |
831 |
Q |
| |
|
|||||| ||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||| || || |||||||||| | | |
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|
| T |
52250989 |
tccctttgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgcgtttaatgagaaagtggaagatattcagaagctgag |
52250890 |
T |
|
| Q |
832 |
taaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcct |
910 |
Q |
| |
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||| ||||| ||||||| | ||||||| |||||||| |||||||||||||||| ||||||||| |||||||| |||||| |
|
|
| T |
52250889 |
taaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaagattgaggagttgcct |
52250811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 828 - 894
Target Start/End: Original strand, 3698843 - 3698909
Alignment:
| Q |
828 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaa |
894 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| |
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|
| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaa |
3698909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 828 - 894
Target Start/End: Original strand, 3702531 - 3702597
Alignment:
| Q |
828 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaa |
894 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| |
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|
| T |
3702531 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaa |
3702597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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