View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814-Insertion-4 (Length: 261)
Name: NF0814-Insertion-4
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814-Insertion-4 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 261
Target Start/End: Complemental strand, 6133825 - 6133573
Alignment:
| Q |
9 |
aaacaagtaaccgattctggagaacgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattc |
108 |
Q |
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| T |
6133825 |
aaacaagtaaccgattctggagaacgaaactgggtagatcttccacgagattcagtgttatccattttccggaagcttgactcaatcgatattctcattc |
6133726 |
T |
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| Q |
109 |
gcccttacaatgtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgccgaattcagccgaccctaacactaaatg |
208 |
Q |
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| T |
6133725 |
gcccttacaatgtttgcaccatatggcgcgaaatctcaaaggaccattccctctatcgcactatcaacatgcccaattcagccgaccctaacactaaatg |
6133626 |
T |
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| Q |
209 |
ggggttactgaatctatgctaccgcgcagttgattacagcttcggccacataa |
261 |
Q |
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| T |
6133625 |
ggagttactgaatctatgctaccgcgcagttgattacagcttcggccacataa |
6133573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 6052089 - 6052255
Alignment:
| Q |
20 |
cgattctggagaacgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaat |
119 |
Q |
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| T |
6052089 |
cgattctggagaacgaaactggctggatcttccacgagatgcagtcttatccattttccggaagctcgacgcaatcgatcttctcgttcgcgctcacaat |
6052188 |
T |
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| Q |
120 |
gtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgccgaatt |
186 |
Q |
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| T |
6052189 |
gtttgcaccacatggcgcaaaatctccaaagacccttttctctttcgcaccattaacatgcccaatt |
6052255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 6045406 - 6045567
Alignment:
| Q |
20 |
cgattctggagaacgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaat |
119 |
Q |
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| T |
6045406 |
cgattctggagagcgaaactggttggatcttccatcagatgtcgtattaaccattttccggaaacttcacacgatcgatcttctccatcgcgctcataac |
6045505 |
T |
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| Q |
120 |
gtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgcc |
181 |
Q |
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| T |
6045506 |
gtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatgcc |
6045567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 6037106 - 6037242
Alignment:
| Q |
28 |
gagaacgaaactgggtagatcttccacgagatgcagtgttatccattttccggaagcttgactcaatcgatattctcattcgcccttacaatgtttgcac |
127 |
Q |
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| T |
6037106 |
gagaacgaaactggctggatcttccacgagatgcagtcttatccattttccagaagcttcccaccattgatattcttattcgcactcccagggtttgcac |
6037205 |
T |
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| Q |
128 |
catatggcgcgaaatctcaaaggacccttccctctat |
164 |
Q |
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| T |
6037206 |
tacgtggcgcaaaatctccaaagaccctttcctctat |
6037242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 181
Target Start/End: Original strand, 6040872 - 6040936
Alignment:
| Q |
117 |
aatgtttgcaccatatggcgcgaaatctcaaaggacccttccctctattgcactatcaacatgcc |
181 |
Q |
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| T |
6040872 |
aatgtttgcaccacatggcgcaaaatctcaaaggatcctttcctctatcacaccatcgacatgcc |
6040936 |
T |
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