View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0814_high_11 (Length: 457)
Name: NF0814_high_11
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_11 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0288 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 229 - 445
Target Start/End: Original strand, 7561 - 7776
Alignment:
| Q |
229 |
ttgggtaagaaaatcgaaagttcataataggaaaaagtacataaactcactttttggtcgcgataagcttcgtcaacctcctcctggcattctaagtagc |
328 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7561 |
ttgggtaagaaaatcgaaacttcataataggaaaa-gtacataaactcactttttggttgcgataagcttcgtcaacctcctcctggcattctaagtagc |
7659 |
T |
|
| Q |
329 |
tagggaagtccttgcccacaagaaaataatctgctcgaccaaaaccttcatttccttccaaggatccaatcaggtcatcatagttgtaagacccaaaaac |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7660 |
tagggaagtccttgcccacaagaaaataatctgctcgaccaaaaccttcatttccttccaaggatccaatcaggtcatcatagttgtaagacccaaaaac |
7759 |
T |
|
| Q |
429 |
accacttctgacatatt |
445 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
7760 |
accacttctgacatatt |
7776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 277 - 444
Target Start/End: Complemental strand, 32257199 - 32257032
Alignment:
| Q |
277 |
actttttggtcgcgataagcttcgtcaacctcctcctggcattctaagtagctagggaagtccttgcccacaagaaaataatctgctcgaccaaaacctt |
376 |
Q |
| |
|
|||||||| || ||||| || | |||||| || || ||||| || ||||||||||||||||||||||| ||||| |||||||| || |||||| | |||| |
|
|
| T |
32257199 |
actttttgatcacgatatgccttgtcaacttcttcttggcactccaagtagctagggaagtccttgccaacaaggaaataatcagcacgaccatagcctt |
32257100 |
T |
|
| Q |
377 |
catttccttccaaggatccaatcaggtcatcatagttgtaagacccaaaaacaccacttctgacatat |
444 |
Q |
| |
|
|||| |||||||| ||||| |||| || ||||||||||| | ||||||||||||||||| |||||| |
|
|
| T |
32257099 |
cattcccttccaaagatcccatcaattcgtcatagttgtaggtgccaaaaacaccacttctaacatat |
32257032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University