View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_high_13 (Length: 449)
Name: NF0814_high_13
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 40013580 - 40014010
Alignment:
| Q |
1 |
caaccaatttggctttattcattgaattgacattatttgcttaacacctcattagcacaataaattgagattataattgagtttaattattgatgttgtg |
100 |
Q |
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| T |
40013580 |
caaccaatttggctttattcattgaattgacattatttgcttaacacctcattagcgcaataaattgagattataattgagtttaattattgatgttgtg |
40013679 |
T |
|
| Q |
101 |
tagcataataagttaattagtgtagtcactttcataattgtaatgtgtgcaaaagataaaaatgttacctaattaaacattgaaaagaagttacttgctt |
200 |
Q |
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| T |
40013680 |
tagcataataagtta----gtgtagtcactttcataattgtaatgtgtgcaaaagataaaaatgttacctaattaaacattgaaaagaagttacttgctt |
40013775 |
T |
|
| Q |
201 |
gattggattacacaataaaaagagcaatttaatagcctctgatagtgactctaaaataataatatagtttggctctca-nnnnnnnnnctcgattaaact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
40013776 |
gattggattacacaataaaaagagcaatttaatagcctctgatagtgactctaaaataataaaatagtttggctctcattttttttttctcgattaaact |
40013875 |
T |
|
| Q |
300 |
ctc-aggttttcttattgttttgccaagttataatgtactctcaattatgaacaaatagattgccatcaagactttgatgctactactatcattctaaag |
398 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40013876 |
ctcaaggttttcttattgttttgccaagttataatgtactctcaattatgaacaaatagattgccatcaagactttgatgctactactatcattctaaag |
40013975 |
T |
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| Q |
399 |
tattcatcaactttaccgatgactaatttttacta |
433 |
Q |
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||||||||||||||| ||||||||||||| |||| |
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| T |
40013976 |
tattcatcaactttattgatgactaattttcacta |
40014010 |
T |
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