View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0814_high_20 (Length: 357)
Name: NF0814_high_20
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 62 - 250
Target Start/End: Original strand, 15419425 - 15419614
Alignment:
| Q |
62 |
cgcaaattcaatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcatt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
15419425 |
cgcaaattcaatctacagaaagaaagaataatgagaaatcttggaatactatgatagataaaccaaggaataatgagtccaatgctaatgagggttcatt |
15419524 |
T |
|
| Q |
161 |
aagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcatatgctagctataactcatgtgataac |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15419525 |
aagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcatatgccagctataactcatgtgataac |
15419614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 71 - 250
Target Start/End: Complemental strand, 17682708 - 17682524
Alignment:
| Q |
71 |
aatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcattaagaacctg |
169 |
Q |
| |
|
|||| |||| |||||| ||| |||||||||||||||| |||| |||||||||| | |||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
17682708 |
aatccacaggaagaaaaaatcatgagaaatcttggaaaactacgatagataaaccacggaataatgagtccaatgttaa---gggttcattcagaacctg |
17682612 |
T |
|
| Q |
170 |
ttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagc--tataactcatgtgataac |
250 |
Q |
| |
|
||||| ||||| |||||||||||||| || ||| |||||| |||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
17682611 |
ttacatcaatttattccgcctttgtctagggtctgaaaatccactggaacaacaattcatatgccagctatataactcatgtgataac |
17682524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 15432633 - 15432738
Alignment:
| Q |
149 |
tgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatg |
243 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||| |||||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
15432633 |
tgagggttcattcagaacctgttacatcaattaattccgcctttgtcaagggtcagaaaatccactgtaacaac-attcatatgaaagctataactcatg |
15432731 |
T |
|
| Q |
244 |
tgataac |
250 |
Q |
| |
|
||||||| |
|
|
| T |
15432732 |
tgataac |
15432738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 15080787 - 15080695
Alignment:
| Q |
163 |
gaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatgtgataac |
250 |
Q |
| |
|
|||||||||||||||||| |||||| ||||| |||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15080787 |
gaacctgttacaacaattcattccgtctttgacaagggtcagaaaatccactggaacaacaattcatatgccagctataactcatgtgataac |
15080695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 14662530 - 14662713
Alignment:
| Q |
67 |
attcaatctacagaaagaaagaataatgagaaatcttggaatactat-atagataaacaaaggaataatgagtccaatgctaatgagggttcattaagaa |
165 |
Q |
| |
|
|||||||| |||| || ||| ||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||||| || |||| |
|
|
| T |
14662530 |
attcaatcaacaggaataaaaaatcatgagaaatcttggaatactgtgatagataaacaaaggaataatttgtccaatgcta---agggttttttcagaa |
14662626 |
T |
|
| Q |
166 |
cctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatgtgataac |
250 |
Q |
| |
|
|| ||||| ||||||||||||||| ||| ||| |||| |||||| ||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
14662627 |
tcttttacatcaattaattccgcctatgt-aagggtcagaaaatccactggaaca--aattcatatgccagctataactcatgtgataac |
14662713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University