View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_high_25 (Length: 317)
Name: NF0814_high_25
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 45974442 - 45974723
Alignment:
| Q |
30 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcat-----gttggtatcaacctttcccatcttcattcgaagttctaatcggtt |
124 |
Q |
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| T |
45974442 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgtcatgttggtatcaacctttcccatcttcattcgaagttctaataggtt |
45974541 |
T |
|
| Q |
125 |
gtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcag |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974542 |
gtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcag |
45974641 |
T |
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| Q |
225 |
aaaataaaatttctattccttcctaacttaatnnnnnnnntaatgccgatctccataaaaaagttggcatcatttggttcat |
306 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974642 |
aaaataaaatttctattccttcctaacttaataaaaaaaataatgccgatctccataaaaaagttggcatcatttggttcat |
45974723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 45857399 - 45857200
Alignment:
| Q |
30 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca |
128 |
Q |
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| T |
45857399 |
ttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcagttatca |
45857300 |
T |
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| Q |
129 |
cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
228 |
Q |
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| T |
45857299 |
tgatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa |
45857200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 45869952 - 45869754
Alignment:
| Q |
30 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca |
128 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| | |||| |||| |
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| T |
45869952 |
ttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcggtagtca |
45869853 |
T |
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| Q |
129 |
cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
228 |
Q |
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| T |
45869852 |
tgatctcta-aggaacacaatcataattgtaaaaatctactgacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa |
45869754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 45980884 - 45981083
Alignment:
| Q |
30 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca |
128 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||| |||||||| ||||||| | |||||| ||||| | | |||||||| | ||||||||| |
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| T |
45980884 |
ttattgttgtcaatcctttttgctttcatttttccggtcccttcaatcttgttggtggttagctttcctatcttgagttgaagttctgaggcggttgtca |
45980983 |
T |
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| Q |
129 |
cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa |
228 |
Q |
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| T |
45980984 |
taatctctgcaggaacacaaccataaatgtaaaaatctactgacttaaagttcaacatataatattagctaatagtttgttaataatttcaatcagaaaa |
45981083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 45969985 - 45970131
Alignment:
| Q |
86 |
atcaacctttcccatcttcattcgaagttctaatcgg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaac |
184 |
Q |
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|||||||||||||||||||||||||||||| | || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
45969985 |
atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
45970084 |
T |
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| Q |
185 |
atataatattaggtaataatttgttgataattttaatcagaaaataa |
231 |
Q |
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|||||| |||| ||||||||| ||| |||||||||||||||||||| |
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| T |
45970085 |
atataacgttagctaataattttttgttaattttaatcagaaaataa |
45970131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45965038 - 45965089
Alignment:
| Q |
30 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45965038 |
ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt |
45965089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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