View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_high_28 (Length: 312)

Name: NF0814_high_28
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_high_28
NF0814_high_28
[»] chr6 (1 HSPs)
chr6 (30-312)||(18151442-18151726)


Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 312
Target Start/End: Complemental strand, 18151726 - 18151442
Alignment:
Q  30 gttcaaagcaaactctcacccattagatgataaggctatataaacacctccaactgggattgcaagtaaaaagaatgagtaacaatacaaatatagcgaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18151726 gttcaaagcaaactctcacccattagatgataaggctatataaacacctccaactgggattgcaagtaaaaagaatgagtaacaatacaaatatagcgaa 18151627  T
Q  130 tctaaatgtatgaacaccaatacat--gagtaacaatacagaatagagaactttcaagtatctataaactttccataattttttgttctacaactatatc 227  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18151626 tctaaatgtatgaacaccaatacatatgagtaacaatacaaaatagagaactttcaagtatctataaactttccataattttttgttctacaactatatc 18151527  T
Q  228 tagagaactttattcaaaatagctcttggtaaaacaatcttagtattggttatgacatacctaacttcaactgtttcctttcaaa 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18151526 tagagaactttattcaaaatagctcttggtaaaacaatcttagtattggttatgacatacctaacttcaactgtttcctttcaaa 18151442  T

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