View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_high_3 (Length: 573)
Name: NF0814_high_3
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 473; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 33 - 557
Target Start/End: Original strand, 41732176 - 41732701
Alignment:
| Q |
33 |
gttatctccttcgcactcgctcctctcaacgatacctgaatcaagtgaacaacaacaatttcaattatcataactaatagtaataatctattatgaaatt |
132 |
Q |
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| T |
41732176 |
gttatctccttcgcactcgctcctctcaacgatacctgaatcaagtgaacaacaacaatttcaattatcacaactaatagtaataatctattatgaaatt |
41732275 |
T |
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| Q |
133 |
gatgaattgataggtatgaaagaagagagtacctggtgtttacgaggtgcatccatgggaaatacattaacttaacttcgctgtgttaaattaatccaac |
232 |
Q |
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| T |
41732276 |
gatgaattgataggtatgaaagaagagagtacctggtgtttacgaggtgcatccatgggaaatacattaacttaacttcgctgtgttaaattaatccaac |
41732375 |
T |
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| Q |
233 |
tttttctaatcttctcgcgatttacttttttcctcacccaaaattttgttctactctctttatcgcaactactaataagtttgatttatttagaagaaag |
332 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41732376 |
tttttctaatcttctcgcgatttacttttttcctcacccaaaattttgttctactctctttatcgcaactactaataagtttgatttatttagaagaaag |
41732475 |
T |
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| Q |
333 |
aaagaacaaggaaggaaaagttcgtttta-gttttttctttcatagttgacatgtcaannnnnnnaattaattattaaaaactaaaatgattattattgt |
431 |
Q |
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| T |
41732476 |
aaagaacaaggaaggaaaagttcgttttatgttttttctttcatagttgacatgtcaatttttttaattaattattaaaaactaaaatgattattattgt |
41732575 |
T |
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| Q |
432 |
tgttgaaaacatggtctaagaataacttttgactttcatccgtatgtatgaaaaatgaagttaggatcgttatacattcttattctttcatcaaagttgt |
531 |
Q |
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| T |
41732576 |
tgttgaaaacatggtctaagaataacttttgactttcatccgtatgtatgaaaaatgaagttaggatcgttgtatattcttattctctcatgaaagttgt |
41732675 |
T |
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| Q |
532 |
actaaatggttgttcaaatatcattg |
557 |
Q |
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| T |
41732676 |
attaaatggttgttcaaatatcattg |
41732701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 564
Target Start/End: Complemental strand, 45154454 - 45154425
Alignment:
| Q |
535 |
aaatggttgttcaaatatcattgttcatct |
564 |
Q |
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| T |
45154454 |
aaatggttgttcaaatatcattgttcatct |
45154425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 559
Target Start/End: Original strand, 240147 - 240187
Alignment:
| Q |
519 |
tcatcaaagttgtactaaatggttgttcaaatatcattgtt |
559 |
Q |
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| T |
240147 |
tcatgaaagttgtactaagtggttgttcaaatatcattgtt |
240187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 522 - 559
Target Start/End: Complemental strand, 25098718 - 25098681
Alignment:
| Q |
522 |
tcaaagttgtactaaatggttgttcaaatatcattgtt |
559 |
Q |
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| T |
25098718 |
tcaaggttgtaccaaatggttgttcaaatatcattgtt |
25098681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 560
Target Start/End: Complemental strand, 48561723 - 48561682
Alignment:
| Q |
519 |
tcatcaaagttgtactaaatggttgttcaaatatcattgttc |
560 |
Q |
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| T |
48561723 |
tcatgaaagttataccaaatggttgttcaaatatcattgttc |
48561682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 527 - 560
Target Start/End: Original strand, 51571667 - 51571700
Alignment:
| Q |
527 |
gttgtactaaatggttgttcaaatatcattgttc |
560 |
Q |
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| T |
51571667 |
gttgtaccaaatggttgttcaaatatcattgttc |
51571700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 525 - 557
Target Start/End: Original strand, 55511006 - 55511038
Alignment:
| Q |
525 |
aagttgtactaaatggttgttcaaatatcattg |
557 |
Q |
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| T |
55511006 |
aagttgtaccaaatggttgttcaaatatcattg |
55511038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 529 - 557
Target Start/End: Original strand, 981621 - 981649
Alignment:
| Q |
529 |
tgtactaaatggttgttcaaatatcattg |
557 |
Q |
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| T |
981621 |
tgtactaaatggttgttcaaatatcattg |
981649 |
T |
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