View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_high_4 (Length: 562)
Name: NF0814_high_4
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 347 - 487
Target Start/End: Original strand, 35037740 - 35037880
Alignment:
| Q |
347 |
aatagagttgttaactattacgggtttgttatcgttgatgaatccagctttacttggaaaaatcttgaaactgatagatatgtggttgtggtattttttg |
446 |
Q |
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| T |
35037740 |
aatagagttgttaactattacgggtttgttatcgttgatgaatccagctttacttggaaaaatcttgaaactgatagatatgtggttgtggtattttttg |
35037839 |
T |
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| Q |
447 |
atagattacatgatgtaattattggatttgttttcatctca |
487 |
Q |
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| T |
35037840 |
atagattacatgatgtaattattggatttgttttcatctca |
35037880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 181 - 273
Target Start/End: Original strand, 35037574 - 35037666
Alignment:
| Q |
181 |
gatctaggtgttctgtgaaatcatgtcgtggaagtgttagaagaagcaatttttagatttttggttcataatctatcacttacatggattgag |
273 |
Q |
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| T |
35037574 |
gatctaggtgttctgtgaaatcatgtcgtggaagtgttagaagaagcaatttttagatttttggttcataatctatcacttacatggattgag |
35037666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 35037394 - 35037477
Alignment:
| Q |
1 |
gctctgctaagggtaaaaaaggaagctttaagggtcttgatgttgctgttaaagtcattcctaaatctaaggtctaatttcatc |
84 |
Q |
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| T |
35037394 |
gctctgctaagggtaaaaaaggaagctttaagggtcttgatgttgctgttaaagtcattcctaaatctaaggtctaatttcatc |
35037477 |
T |
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