View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0814_high_48 (Length: 251)
Name: NF0814_high_48
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_48 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 41290126 - 41289883
Alignment:
| Q |
8 |
tgagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41290126 |
tgagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatga |
41290027 |
T |
|
| Q |
108 |
aatgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggag |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41290026 |
aatgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggag |
41289927 |
T |
|
| Q |
208 |
cttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41289926 |
cttggttccatcctagctaggtgtagagttaatttatctgatat |
41289883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 6470590 - 6470830
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| ||||||| ||||||||||||||||| |||| | ||||||||| ||| |||||||||||||||| | |
|
|
| T |
6470590 |
gagacgaatttggtatgtttataggagctaaaattatatggctgcaaccgattatgtcagttgacataggagaagcattaagattactagcagctatgga |
6470689 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggagc |
208 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| | || ||||||||||||| || |||||||||| || ||| |||| |||||||||||| | |||| |
|
|
| T |
6470690 |
atgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggag--tagtagactcattgaactcacaagttcgagatgacacagagc |
6470787 |
T |
|
| Q |
209 |
ttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6470788 |
ttggttccatcttagctaggtgtagagtaaatttatctgatat |
6470830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 6750640 - 6750400
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
|||| ||||||| |||||||| |||||||||| ||||||| ||||||||||||||||| |||| | ||||||||| ||| |||||||||||||||| | |
|
|
| T |
6750640 |
gagacgaatttggtatgtttataggagctaaaattatatggctgcaaccgattatgtcagttgacataggagaagcattaagattactagcagctatgga |
6750541 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggagc |
208 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| | | ||||||||||||| || |||||||||| | ||| |||| |||||||||||| |||||| |
|
|
| T |
6750540 |
atgggtaagagaattggagttcaagaaagttatcttctttttagattcaaaaggag--tagtagactcactgaactcacaagttcgagatgacacggagc |
6750443 |
T |
|
| Q |
209 |
ttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
6750442 |
ttggttccatcttagctaggtgtagagtaaatttatctgatat |
6750400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 28694905 - 28695141
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||| | ||||||||| |||| |||||||||||||||| | |
|
|
| T |
28694905 |
gagatgaatttggtatgtttatatgagctaaaactatatggctgcaaccgattatgtcagttgacataggagaagcattaggattactagcagctatgga |
28695004 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggagc |
208 |
Q |
| |
|
|||||||| |||| | ||||| ||||| |||| | || |||||||| |||| || |||||||||| | ||| || | |||||||||||| | |||| |
|
|
| T |
28695005 |
atgggtaatagaattggagttcaagaaagttatcttctgtttagattctaaaggag--tagtagactcactgaactcagaggttcgagatgacacagagc |
28695102 |
T |
|
| Q |
209 |
ttggttccatcctagctaggtgtagagttaatttatctg |
247 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
28695103 |
ttggttccatcttagctaggtgtagagtaaatttatctg |
28695141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 8746842 - 8746602
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| |||| | ||||||||| | | |||||||||||||||||| |
|
|
| T |
8746842 |
gagatgaatttggtatgtttataggagctaaaactatttggctgcaaccgattatgtcagttgacagaggagaagcatcatgattactagcagctatgaa |
8746743 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggagc |
208 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| | || ||||||||||||| || |||||||||| |||||| |||| |||||||||||| | |||| |
|
|
| T |
8746742 |
atgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggag--tagtagactcattcaactcacaggttcgagatgacacagagc |
8746645 |
T |
|
| Q |
209 |
ttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
8746644 |
ttggttccatcttagctaggtgtagagtaaatttatctaatat |
8746602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 32011275 - 32011516
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatg-a |
107 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| | ||||||||||| |||||||| ||||||| | |
|
|
| T |
32011275 |
gagatgaattcgacatgcctatggaagctaaaactatatggttgcaaccgattatgtcaactgatataatagaagctttaggattactagaagctatgca |
32011374 |
T |
|
| Q |
108 |
aatgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggag |
207 |
Q |
| |
|
||||||||||||| || |||||||||| ||||| | |||||||||||||||||| | ||||||||| |||||||||| ||||||||||||| | || |
|
|
| T |
32011375 |
aatgggtaagagagttatagtttaagaaagttattttctgcttagattcaaaagta--acagtagactcattcaacacacgtgttcgagatgacacatag |
32011472 |
T |
|
| Q |
208 |
cttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
||||||||||| ||| ||||||| |||||| |||| ||||||| |
|
|
| T |
32011473 |
attggttccatcttagttaggtgtggagttactttacctgatat |
32011516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 6955376 - 6955138
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||| |||| | ||||||||| | || ||||||||| |||||| | |
|
|
| T |
6955376 |
gagatgaatttggtatgtttataggagctaaaactatatggctgcaaccgattatgtcagttgacataggagaagcatcaggattactagccgctatgga |
6955277 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgacgcggagc |
208 |
Q |
| |
|
||||||||||||| | ||||| ||||| |||| | || ||||||||||||| || |||||||||| |||||| ||||||||||||||||| | |||| |
|
|
| T |
6955276 |
atgggtaagagaattggagttcaagaaagttatcttctgtttagattcaaaaggag--tagtagactcattcaactcacatgttcgagatgacacagagc |
6955179 |
T |
|
| Q |
209 |
ttggttccatcctagctaggtgtagagttaatttatctgatat |
251 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||| |||| |
|
|
| T |
6955178 |
ttggttccatcttag--aggtgtagagtaaatttatctaatat |
6955138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 34118882 - 34118692
Alignment:
| Q |
9 |
gagatgaatttgacatgtttatgggagctaaaactatatggttgcaaccgattatgtcaattgataaaggagaagctttagaattactagcagctatgaa |
108 |
Q |
| |
|
||||||||||| |||||| | |||||||||| |||||| ||||||||||||||| | |||| | ||||||||| |||| ||||||||||||| || | |
|
|
| T |
34118882 |
gagatgaattttgtatgtttgtaggagctaaaatgatatggctgcaaccgattatgttagttgacacaggagaagcattaggattactagcagctctgga |
34118783 |
T |
|
| Q |
109 |
atgggtaagagaactagagtttaagaagattattgtttgcttagattcaaaagtagtatagtagactcgttcaacacacatgttcgagatgac |
201 |
Q |
| |
|
||||| ||||||| | ||||||||||| ||||| | || ||| ||||||||| || |||||| ||| | ||| ||||||||||||||||| |
|
|
| T |
34118782 |
atgggcaagagaattggagtttaagaaaattatcttctgtttaaattcaaaaggag--tagtagcctcatgtaactcacatgttcgagatgac |
34118692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University