View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_high_5 (Length: 522)
Name: NF0814_high_5
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 19155901 - 19155509
Alignment:
| Q |
9 |
agcaaaggggaagggaatcctacaacaccatcaagtcattgctgagtttgaagaaatccctgaggagaaaagacaaaaactagttaatggagcctttgga |
108 |
Q |
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| T |
19155901 |
agcaaaggggaagggaatcctacagcaccatcaagtaattgctgagtttgaagaaatccctgaggagaagaggcaaaaactagttaatggagcattcgga |
19155802 |
T |
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| Q |
109 |
gaagttttgagatctactcaggtaactgatatattgtttattagtactttttgtgtttcaatggatctatat--ttggtggagtttgttaagagtcttct |
206 |
Q |
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| T |
19155801 |
gaagttttgagatctactcaggtaactgatatattgtttattagtactttttgtgttacaatgaatctatatatttggtggagtttgttaagagttttct |
19155702 |
T |
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| Q |
207 |
----------tttggtttgtgttgtgtaggaagctgtagtgttgccaccatttgttgctcttgctgttcgtccaaggcccggtgtttgggagtatcttag |
296 |
Q |
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| T |
19155701 |
caagttttcttttggtttgtgttgtgtaggaagctgtagtattgccaccatttgttgctcttgctgttcgcccaaggcccggtgtttgggagtatctaag |
19155602 |
T |
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| Q |
297 |
agttgatgtgcacagccttgttgtcgatgaacttcgtgctgccgagtatctcaagttcaaggaggaacttgttgaaggaaggtaaggatttta |
389 |
Q |
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| T |
19155601 |
agttgatgtgcacagccttgttgtcgatgaacttcgtgctgccgagtatctcaagttcaaggaggaacttgttgaaggaaggtaaggatttta |
19155509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 223 - 381
Target Start/End: Original strand, 51649990 - 51650148
Alignment:
| Q |
223 |
taggaagctgtagtgttgccaccatttgttgctcttgctgttcgtccaaggcccggtgtttgggagtatcttagagttgatgtgcacagccttgttgtcg |
322 |
Q |
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| T |
51649990 |
taggaagcaatagttttgccaccatgggttgcacttgctgttcgtccaaggccaggtatttgggagtatctgagagtaaatgtgcatgctcttgttgttg |
51650089 |
T |
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| Q |
323 |
atgaacttcgtgctgccgagtatctcaagttcaaggaggaacttgttgaaggaaggtaa |
381 |
Q |
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| T |
51650090 |
aaaatttgcaacctgctgagtttctcaaattcaaggaagaacttgttgatggaaggtaa |
51650148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 55866908 - 55866833
Alignment:
| Q |
233 |
tagtgttgccaccatttgttgctcttgctgttcgtccaaggcccggtgtttgggagtatcttagagttgatgtgca |
308 |
Q |
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| T |
55866908 |
tagttttgccaccatgggttgctcttgctgttcgtctaaggccaggtatttgggattatctaagagtgaatgtgca |
55866833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 51649794 - 51649856
Alignment:
| Q |
9 |
agcaaaggggaagggaatcctacaacaccatcaagtcattgctgagtttgaagaaatccctga |
71 |
Q |
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| T |
51649794 |
agcaaagggaaagggaattttgcaacaccatcaagtgattgctgagtttgaggaaattcctga |
51649856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 299
Target Start/End: Original strand, 29143870 - 29143930
Alignment:
| Q |
239 |
tgccaccatttgttgctcttgctgttcgtccaaggcccggtgtttgggagtatcttagagt |
299 |
Q |
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| T |
29143870 |
tgccaccatgggttgctcttgctgttcgtctaatgccaggtatttgagagtatctaagagt |
29143930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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