View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_high_50 (Length: 251)

Name: NF0814_high_50
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_high_50
NF0814_high_50
[»] chr4 (8 HSPs)
chr4 (1-248)||(3909536-3909784)
chr4 (20-78)||(2209113-2209171)
chr4 (20-78)||(26176123-26176181)
chr4 (3-77)||(5429291-5429365)
chr4 (20-78)||(46570243-46570301)
chr4 (25-78)||(37740237-37740290)
chr4 (3-69)||(6655357-6655423)
chr4 (33-69)||(50263417-50263453)
[»] chr8 (5 HSPs)
chr8 (4-112)||(1345854-1345962)
chr8 (3-78)||(4743677-4743752)
chr8 (3-57)||(30142973-30143027)
chr8 (20-71)||(4731276-4731327)
chr8 (3-45)||(42435692-42435734)
[»] scaffold0066 (1 HSPs)
scaffold0066 (3-68)||(20898-20963)
[»] chr2 (4 HSPs)
chr2 (3-78)||(36318493-36318568)
chr2 (25-79)||(28446415-28446469)
chr2 (26-59)||(2837349-2837382)
chr2 (34-66)||(15903468-15903500)
[»] chr7 (6 HSPs)
chr7 (20-78)||(2761780-2761838)
chr7 (20-102)||(6360629-6360711)
chr7 (20-78)||(48599995-48600053)
chr7 (3-78)||(29608145-29608219)
chr7 (54-102)||(2361672-2361720)
chr7 (3-71)||(48491217-48491284)
[»] chr1 (6 HSPs)
chr1 (5-78)||(3156478-3156550)
chr1 (25-78)||(37879613-37879666)
chr1 (10-78)||(4553138-4553206)
chr1 (3-70)||(11348120-11348186)
chr1 (20-78)||(49917960-49918018)
chr1 (3-69)||(37033770-37033836)
[»] chr5 (4 HSPs)
chr5 (20-79)||(19806037-19806096)
chr5 (20-78)||(27014946-27015004)
chr5 (20-78)||(39469010-39469068)
chr5 (13-69)||(3076113-3076169)
[»] chr3 (4 HSPs)
chr3 (3-78)||(23410813-23410888)
chr3 (10-70)||(23392305-23392365)
chr3 (3-45)||(24694715-24694757)
chr3 (3-69)||(49200152-49200218)
[»] chr6 (2 HSPs)
chr6 (25-78)||(17759348-17759401)
chr6 (54-102)||(3809438-3809486)
[»] scaffold0286 (1 HSPs)
scaffold0286 (3-69)||(10959-11025)


Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 3909784 - 3909536
Alignment:
Q  1 ttgacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttttt-ccaaaccttcaattttgag 99  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||    
T  3909784 ttgacaccgtgcaaaacatgctcacgacattgcaaaatcgtgacatgcttcaaaaatcgtgtcacgattttaattttttttccaaaccttcaattttgag 3909685  T
Q  100 tcaatgtacaacagaacatttgaactcagatatgattttcttcttttaatggacactttcattttaaaaaggagataaatttattgaatataataatatt 199  Q
    ||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3909684 tcaatgtgcaacagaacatttgtactaagatatgattttcttcttttaatggacactttcattttaaaaaggagataaatttattgaatataataatatt 3909585  T
Q  200 atttaaatggagaagattaattgttgaactcggcccttcttctcactcg 248  Q
    ||||||||||||||||||| ||||||||||||||||| |||||| ||||    
T  3909584 atttaaatggagaagattagttgttgaactcggccctccttctctctcg 3909536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 2209171 - 2209113
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  2209171 gctctcgacattgcaaaatcgtgacacgcttcaaaaatcgtgtcacgattccaagtttt 2209113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 26176123 - 26176181
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  26176123 gctctcgacattgcaaaatcgtgacacgcttcacaaattgtgtcacgattcaaagtttt 26176181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 77
Target Start/End: Complemental strand, 5429365 - 5429291
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagttt 77  Q
    |||||| ||||||| |||||| | ||||||||||||||||||| ||||  |||||||||||| ||||| ||||||    
T  5429365 gacaccctgcaaaacatgctctcaacattgcaaaatcgtgacacgcttaccaaatcgtgtcatgattccaagttt 5429291  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 46570243 - 46570301
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||| ||||||||||||| |||||||||||||||||||| ||| |||||||    
T  46570243 gctctcgacatttcaaaatcgtgacacgcttcacaaatcgtgtcacggttccaagtttt 46570301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 37740290 - 37740237
Alignment:
Q  25 cgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| |||||||||||||||| |||||| ||||||||||||||||| |||||||    
T  37740290 cgacgttgcaaaatcgtgacacgcttcagaaatcgtgtcacgattccaagtttt 37740237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 6655423 - 6655357
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| || |   ||||||||||||||||    
T  6655423 gacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 6655357  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 50263417 - 50263453
Alignment:
Q  33 caaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    ||||||||||||||||||  |||||||||||||||||    
T  50263417 caaaatcgtgacatgcttagcaaatcgtgtcacgatt 50263453  T

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Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 112
Target Start/End: Original strand, 1345854 - 1345962
Alignment:
Q  4 acaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagttttttccaaaccttcaattttgagtcaa 103  Q
    ||||| |||| || |||||| || |||||||||||| |||||| ||||||||||||| |||||||  ||||||||||||||||||||| |||||||||||    
T  1345854 acaccctgcagaacatgctctcggcattgcaaaatcatgacatacttcacaaatcgtatcacgatagtaagttttttccaaaccttcatttttgagtcaa 1345953  T
Q  104 tgtacaaca 112  Q
    |||||||||    
T  1345954 tgtacaaca 1345962  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 4743677 - 4743752
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||||| | ||||| ||||||||| |||||| |||| |||||||||||||| |||||||||||||||| |||||||    
T  4743677 gacacccttcaaaacatgctcacggcattgcgaaattgtgacatgcttcactaatcgtgtcacgattccaagtttt 4743752  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 30143027 - 30142973
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaat 57  Q
    |||||| ||||||| |||||||||| ||||| ||||||||||| |||||||||||    
T  30143027 gacaccctgcaaaacatgctcacgaaattgcgaaatcgtgacacgcttcacaaat 30142973  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 4731327 - 4731276
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattct 71  Q
    |||||||||||||| ||||||||||| | ||  |||||||||||||||||||    
T  4731327 gctcacgacattgcgaaatcgtgacacggttgtcaaatcgtgtcacgattct 4731276  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 42435692 - 42435734
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgaca 45  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||    
T  42435692 gacaccctgcaaaacatgctcacggcattgcaaaatcgtgaca 42435734  T

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Target: scaffold0066 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 20898 - 20963
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgat 68  Q
    |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20898 gacaccctgcaaaacatgctcacgacattgcaaaatcgtgacacgcttcacaaatcgtgtcacgat 20963  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 36318493 - 36318568
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||| | |||||||||||||||||||||| |||||||    
T  36318493 gacaccctgcaaaacatgctctcgacattgcgaaatcgtgacacgtttcacaaatcgtgtcacgattccaagtttt 36318568  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 28446469 - 28446415
Alignment:
Q  25 cgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagttttt 79  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||    
T  28446469 cgacattgcaaaattgtgacacgcttcacaaatcgtgtcacgattccaagttttt 28446415  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 2837349 - 2837382
Alignment:
Q  26 gacattgcaaaatcgtgacatgcttcacaaatcg 59  Q
    |||||||||||||||||||| |||||||||||||    
T  2837349 gacattgcaaaatcgtgacacgcttcacaaatcg 2837382  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 15903500 - 15903468
Alignment:
Q  34 aaaatcgtgacatgcttcacaaatcgtgtcacg 66  Q
    |||||||||||| ||||||||||||||||||||    
T  15903500 aaaatcgtgacacgcttcacaaatcgtgtcacg 15903468  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 2761780 - 2761838
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  2761780 gctctcgacattgcaaaatcgtgacatgcttcacaaatcgggtcacgattccaagtttt 2761838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 6360629 - 6360711
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagttttttccaaaccttcaattttgagtca 102  Q
    |||| |||||||||||||| | |||| ||||||||||||||||||| |||| | |||||||||||||||||| || |||||||    
T  6360629 gctctcgacattgcaaaattgcgacacgcttcacaaatcgtgtcactattccaggttttttccaaaccttcatttatgagtca 6360711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 48599995 - 48600053
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  48599995 gctctcgacattgcaaaatcgtgacacgcttcacaaatcgtgtcacgattccaagtttt 48600053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 29608219 - 29608145
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||||| ||||||||| |||| |||||||||||||||||||||  ||||||||||||| ||||||||| |||||||    
T  29608219 gacaccctgcaaaata-gctctcgacattgcaaaatcgtgacacacttcacaaatcgtatcacgattcaaagtttt 29608145  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 2361672 - 2361720
Alignment:
Q  54 aaatcgtgtcacgattctaagttttttccaaaccttcaattttgagtca 102  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  2361672 aaatcgtgtcacgattccaagttttttccaaaccttcatttttgagtca 2361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 71
Target Start/End: Complemental strand, 48491284 - 48491217
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattct 71  Q
    |||||| ||||||| | |||||||||||||| || |||||||| | ||  |||||||||||||||||||    
T  48491284 gacaccctgcaaaaca-gctcacgacattgcgaattcgtgacacggttgccaaatcgtgtcacgattct 48491217  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 3156550 - 3156478
Alignment:
Q  5 caccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||| |||| | ||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  3156550 caccctgcaaaata-gctctcaacattgcaaaatcgtgacacgcttcacaaatcgtgtcacgattcaaagtttt 3156478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 78
Target Start/End: Original strand, 37879613 - 37879666
Alignment:
Q  25 cgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  37879613 cgacattgcaaaatcgtgacacgcttcacaaatcgtgtcacgattccaagtttt 37879666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 4553138 - 4553206
Alignment:
Q  10 tgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    ||||||| ||| ||||| |||||| ||||||||||| |||||||||||||||||||||||| |||||||    
T  4553138 tgcaaaacatgttcacggcattgcgaaatcgtgacacgcttcacaaatcgtgtcacgattccaagtttt 4553206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 11348186 - 11348120
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattc 70  Q
    |||||| ||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  11348186 gacaccctgcaaaaca-gctctcgacattgcaaaatcgtgacacgcttcacaaatcgtgtcacgattc 11348120  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 49918018 - 49917960
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  49918018 gctctcgacattgcaaaattgtgacacgcttcacaaatcgtgtcacgattccaagtttt 49917960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 37033770 - 37033836
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    |||||| ||||||| |||||||||||||||||||||||||||| || |   ||||||||||||||||    
T  37033770 gacaccctgcaaaacatgctcacgacattgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 37033836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 19806096 - 19806037
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagttttt 79  Q
    |||| ||||||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  19806096 gctctcgacattgcaaaatcgtgacacgcgtcacaaatcgtgtcacgattcaaagttttt 19806037  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Complemental strand, 27015004 - 27014946
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  27015004 gctctcgacattgcaaaatcatgacacgcttcacaaatagtgtcacgattccaagtttt 27014946  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 39469010 - 39469068
Alignment:
Q  20 gctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||| ||||||||||||||| ||||| |||||||||||||||||||||||  |||||||    
T  39469010 gctctcgacattgcaaaatcatgacacgcttcacaaatcgtgtcacgatttaaagtttt 39469068  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 3076113 - 3076169
Alignment:
Q  13 aaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    |||| |||||||| |||| | |||||||| ||| |||||||||||||||||||||||    
T  3076113 aaaacatgctcacaacataggaaaatcgtaacacgcttcacaaatcgtgtcacgatt 3076169  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 23410813 - 23410888
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||||| ||||||| |||||| ||||||||| ||||||||||| ||||||||||| |||||||||||  |||||||    
T  23410813 gacaccctgcaaaacatgctctcgacattgcgaaatcgtgacacgcttcacaaattgtgtcacgatttcaagtttt 23410888  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 23392305 - 23392365
Alignment:
Q  10 tgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattc 70  Q
    ||||||| |||||| ||||||||  ||||||||||| ||||||||||||||||||||||||    
T  23392305 tgcaaaacatgctctcgacattgtgaaatcgtgacacgcttcacaaatcgtgtcacgattc 23392365  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 24694757 - 24694715
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgaca 45  Q
    |||||| ||||||| ||||||||||||||||||||||||||||    
T  24694757 gacaccctgcaaaacatgctcacgacattgcaaaatcgtgaca 24694715  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Original strand, 49200152 - 49200218
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| || |   ||||||||||||||||    
T  49200152 gacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctgtaaaatcgtgtcacgatt 49200218  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 17759401 - 17759348
Alignment:
Q  25 cgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgattctaagtttt 78  Q
    |||||||||||||| |||||| |||||||||||||||||||||||| |||||||    
T  17759401 cgacattgcaaaattgtgacacgcttcacaaatcgtgtcacgattccaagtttt 17759348  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 3809438 - 3809486
Alignment:
Q  54 aaatcgtgtcacgattctaagttttttccaaaccttcaattttgagtca 102  Q
    ||||||||||||||||  |||||||||||||||| | | ||||||||||    
T  3809438 aaatcgtgtcacgatttcaagttttttccaaaccatgatttttgagtca 3809486  T

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Target: scaffold0286 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 11025 - 10959
Alignment:
Q  3 gacaccgtgcaaaatatgctcacgacattgcaaaatcgtgacatgcttcacaaatcgtgtcacgatt 69  Q
    |||||| ||||||| ||||||||| |||||||||||||||||| || |   ||||||||||||||||    
T  11025 gacaccctgcaaaacatgctcacggcattgcaaaatcgtgacacgcctatgaaatcgtgtcacgatt 10959  T

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