View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_high_8 (Length: 494)

Name: NF0814_high_8
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_high_8
NF0814_high_8
[»] chr4 (10 HSPs)
chr4 (213-340)||(46024953-46025083)
chr4 (213-299)||(46306535-46306617)
chr4 (387-426)||(46306624-46306663)
chr4 (267-340)||(46263158-46263238)
chr4 (13-65)||(46306063-46306111)
chr4 (213-271)||(46262575-46262629)
chr4 (164-207)||(46025129-46025172)
chr4 (164-207)||(46262486-46262529)
chr4 (164-207)||(46306446-46306489)
chr4 (337-386)||(46302775-46302822)


Alignment Details
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 213 - 340
Target Start/End: Complemental strand, 46025083 - 46024953
Alignment:
Q  213 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttc-------tttgtctttt 305  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| ||||||||||||||||||| |||       ||||||||||    
T  46025083 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctcattccctcttttttgtctttt 46024988  T
Q  306 aggaaccaacatccatttgataatcacgacaagaa 340  Q
    |||||||||||| |||||||||||||| |||||||    
T  46024987 aggaaccaacattcatttgataatcaccacaagaa 46024953  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 46306535 - 46306617
Alignment:
Q  213 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacatatattttaattctgcatctctttctttg 299  Q
    ||||||||||||||||||||||| |||||||||||    |||||||||||||||||||| |||||||||||||||||||||||||||    
T  46306535 caccaaccgcaagttctactgcacatgattcacgt----ccttggccttttgtaaacatttattttaattctgcatctctttctttg 46306617  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 387 - 426
Target Start/End: Original strand, 46306624 - 46306663
Alignment:
Q  387 tatacactctggccaaaaacatataagttacgcataacat 426  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46306624 tatacactctggccaaaaacatataagttacgcataacat 46306663  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 46263158 - 46263238
Alignment:
Q  267 aacatatattttaattctgcatctctttc-------tttgtcttttaggaaccaacatccatttgataatcacgacaagaa 340  Q
    ||||| ||||||||||||||||||| |||       |||||||||||||||||||||| |||||||||||||| |||||||    
T  46263158 aacatttattttaattctgcatctcattccctcttttttgtcttttaggaaccaacattcatttgataatcaccacaagaa 46263238  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 46306063 - 46306111
Alignment:
Q  13 aaattgtattaaggaagctcctacaagtgtgatatatagattaatcgattcct 65  Q
    |||||||||||||||||||||||||||||||    ||||||||||||||||||    
T  46306063 aaattgtattaaggaagctcctacaagtgtg----atagattaatcgattcct 46306111  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 271
Target Start/End: Original strand, 46262575 - 46262629
Alignment:
Q  213 caccaaccgcaagttctactgcatatgattcacgtacgtccttggccttttgtaaacat 271  Q
    |||||||| |||||||||||||| |||||||    ||||||||||||||||||||||||    
T  46262575 caccaaccacaagttctactgcacatgattc----acgtccttggccttttgtaaacat 46262629  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Complemental strand, 46025172 - 46025129
Alignment:
Q  164 tcataatttttatcgagttacaagacaacatgaatacaattttt 207  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46025172 tcataatttttatcaatatacaagacaacatgaatacaattttt 46025129  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 46262486 - 46262529
Alignment:
Q  164 tcataatttttatcgagttacaagacaacatgaatacaattttt 207  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46262486 tcataatttttatcaatatacaagacaacatgaatacaattttt 46262529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 46306446 - 46306489
Alignment:
Q  164 tcataatttttatcgagttacaagacaacatgaatacaattttt 207  Q
    |||||||||||||| |  ||||||||||||||||||||||||||    
T  46306446 tcataatttttatcaatatacaagacaacatgaatacaattttt 46306489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 386
Target Start/End: Original strand, 46302775 - 46302822
Alignment:
Q  337 agaagattattattagtaaacaacatgcagaaagaagttgagtctttata 386  Q
    ||||||||||||  | ||| ||||||||||||||||||||||||||||||    
T  46302775 agaagattatta--aataaccaacatgcagaaagaagttgagtctttata 46302822  T

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