View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_11 (Length: 476)
Name: NF0814_low_11
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 30 - 467
Target Start/End: Complemental strand, 48553344 - 48552902
Alignment:
| Q |
30 |
taagctgtccaagaaatataatctctgcctataaatgaaaaaatgtaccaagctataatcagatattcctctcaatcatgtttcattacctatagcctat |
129 |
Q |
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| T |
48553344 |
taagctgtccaagaaatataatctctgcctataaatgaaaaaatgtaccaagctataatcagatattcctctcaatcatgtttcattacctatagcctat |
48553245 |
T |
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| Q |
130 |
ttttattcataactctagtacnnnnnnnnnnnnnaattcaattatgacttgtatgggaataatttaattcatatatactatcaacgtaaaaatctgttac |
229 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
48553244 |
ttttattcataactctagtactttttttttttt-aattcaattatgacttgtatgggagtaatttaattcatatatactatcaacgtaaaaatttgttac |
48553146 |
T |
|
| Q |
230 |
actgtcgatcgatgatta------tttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttgttgatagattaacaaaaaccgta |
323 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48553145 |
actgtcgatcgatgattaaaaacatttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttgttgatagattaacaaaaaccgta |
48553046 |
T |
|
| Q |
324 |
tatcaaaatttaaaaacttttagaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttca |
423 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48553045 |
tatcaaaatttaaaaacttttagaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttca |
48552946 |
T |
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| Q |
424 |
aaccatgtctgagtttatcatcaacaaagcccttatacacaggt |
467 |
Q |
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| T |
48552945 |
aaccatgtctgagtttatcatcaacaaaacccttatacacaggt |
48552902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 345 - 467
Target Start/End: Original strand, 3675740 - 3675862
Alignment:
| Q |
345 |
agaaaactaaccagccactccctgtgaccttgtgagccatccaagttgagtcgtttgacagcaataggttgagccttcaaaccatgtctgagtttatcat |
444 |
Q |
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||||| |||||||||||||| || |||||||| |||||||||||| | | ||| ||||| | || ||||||||| || || ||||| |||||||||| |
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| T |
3675740 |
agaaagctaaccagccactctctatgaccttgcaagccatccaagtccaaacatttaacagctacagtttgagcctttaacccttgtctaagtttatcat |
3675839 |
T |
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| Q |
445 |
caacaaagcccttatacacaggt |
467 |
Q |
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||||||| |||||||| |||||| |
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| T |
3675840 |
caacaaaacccttataaacaggt |
3675862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 307
Target Start/End: Original strand, 51060251 - 51060291
Alignment:
| Q |
267 |
acttctaaagtcacatatgattgattgtgatttgttgatag |
307 |
Q |
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| T |
51060251 |
acttctaaagtcacaaatgattgattgtgatttgttgatag |
51060291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 35169991 - 35170047
Alignment:
| Q |
248 |
tttgaatttaatcataaaaacttctaaagtcacatatgattgattgtgatttgttga |
304 |
Q |
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||||| ||||||||||| ||||||||||||||| ||||||| || ||||||||||| |
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| T |
35169991 |
tttgactttaatcataactacttctaaagtcacacatgattggttatgatttgttga |
35170047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 304
Target Start/End: Complemental strand, 46937058 - 46936999
Alignment:
| Q |
247 |
atttgaatttaatcataaaaacttctaaagtcaca--tatgattgattgtgatttgttga |
304 |
Q |
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|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
46937058 |
atttgattttaatcataattgcttctaaagtcacacatatgattgattgtgatttgttga |
46936999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 307
Target Start/End: Original strand, 33786191 - 33786225
Alignment:
| Q |
273 |
aaagtcacatatgattgattgtgatttgttgatag |
307 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
33786191 |
aaagtcacatataattgattgtgatttgttgatag |
33786225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 303
Target Start/End: Original strand, 36501986 - 36502035
Alignment:
| Q |
254 |
tttaatcataaaaacttctaaagtcacatatgattgattgtgatttgttg |
303 |
Q |
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||||||||||| |||| |||| | ||||||||||||||||||||||||| |
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| T |
36501986 |
tttaatcataattacttgtaaacttacatatgattgattgtgatttgttg |
36502035 |
T |
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