View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_13 (Length: 450)
Name: NF0814_low_13
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 44 - 444
Target Start/End: Complemental strand, 40654962 - 40654548
Alignment:
| Q |
44 |
aaatattgccctcggatcattttaccaattgaagttatgcagatgaagtagctgaggctcctacggtgaagcttgtgaaaagttcaatattcagctatga |
143 |
Q |
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| T |
40654962 |
aaatattgccctcggatcattttaccaattgaagttatgcagatgaagtagctgaggctcctacggtgaagcttgtgaaaagttcaatattcagctatga |
40654863 |
T |
|
| Q |
144 |
gcaagcatggcacaggtattgaagcagctaagatcttagagagaaattt---------------ttattcaagtgtttgcaatgtatttgttaatgatat |
228 |
Q |
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| T |
40654862 |
gcaagcatggcacaggtattgaagcagctaagatcttagagagaaatttcttagagagaaatttttattcaagtgtttgcaatgtatttgttaatgatat |
40654763 |
T |
|
| Q |
229 |
gtttagttcttggatcttgatagacattgttttgtatagatctttcagttctttgtttaaattttgtattgctgtgtggcatggtggtgtatataacatt |
328 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40654762 |
gtttagttcttggatcttgatagacattgttttgtatagatctttcagttctttgtttaaattttgtattgctgtgtggcatggtggtg--tataacatt |
40654665 |
T |
|
| Q |
329 |
taaaatatgaatgttgaaacttatcatgcacaaatgctcacccacatgcaaaagcaactatgattatgagcttatattccatcttgaattatta-ttttt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40654664 |
taaaatatgaatgttgaaacttatcatgcacaaatgctcacccacatgcaaaagcaactatgattatgagcttatattccatcttgaattattatttttt |
40654565 |
T |
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| Q |
428 |
gctcgtcttttcagcat |
444 |
Q |
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||||||||||||||||| |
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| T |
40654564 |
gctcgtcttttcagcat |
40654548 |
T |
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