View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_19 (Length: 390)
Name: NF0814_low_19
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 39586465 - 39586830
Alignment:
| Q |
15 |
cttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgct |
114 |
Q |
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| T |
39586465 |
cttgccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgct |
39586564 |
T |
|
| Q |
115 |
ctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttc |
214 |
Q |
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| T |
39586565 |
ctgtcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttc |
39586664 |
T |
|
| Q |
215 |
tttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaacc |
314 |
Q |
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| T |
39586665 |
tttgtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaacc |
39586764 |
T |
|
| Q |
315 |
attttccacaggaaagcagaaaacgattcaagttttgagcgcttaacgcttccactattatctgtg |
380 |
Q |
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| T |
39586765 |
attttccacaagaaagcagaaaacgattcaagttttgagcgcttaacgcttccactattatttgtg |
39586830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 39553361 - 39553701
Alignment:
| Q |
18 |
gccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctg |
117 |
Q |
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| T |
39553361 |
gccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcag |
39553460 |
T |
|
| Q |
118 |
tcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttcttt |
217 |
Q |
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| T |
39553461 |
ccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttcttt |
39553560 |
T |
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| Q |
218 |
gtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccatt |
317 |
Q |
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| T |
39553561 |
gtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccatt |
39553660 |
T |
|
| Q |
318 |
ttccacaggaaagcagaaaacgattcaagttttgagcgctt |
358 |
Q |
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| T |
39553661 |
ttccacaagaaagcagaaaaggactcgagttttgagcgctt |
39553701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 39543342 - 39543679
Alignment:
| Q |
18 |
gccaatcccggaaccggtcgatgctcttccacccaatcaattagtcccaagaaatgttcttccgtgtccgcaacctccacaaactcatgaacttgctctg |
117 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||| || || || | || |||||| ||||||||||||| | || | |
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| T |
39543342 |
gccaatccaggaactggtcgatgctcttccacccaatcaattagacccaagaaatgctcctctgtcactgctgcctccaaaaactcatgaactcgatcag |
39543441 |
T |
|
| Q |
118 |
tcacccaacataacgacttttcaacaagttcttctattaatctacaactatagggagttgaaagcacattcccaaaatacgaactcataaactcttcttt |
217 |
Q |
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| T |
39543442 |
ccacccaacatagcggattatcaaccagctcttctgctaatctaccaccatagggaatcgaaagcacattcccaaaatatgaattcataagctcttcttt |
39543541 |
T |
|
| Q |
218 |
gtttttgtcaccgttgcttaatctctttcttccgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccatt |
317 |
Q |
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| T |
39543542 |
gtttttgtcaccgttgcttagcctctttcttccgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccatt |
39543641 |
T |
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| Q |
318 |
ttccacaggaaagcagaaaacgattcaagttttgagcg |
355 |
Q |
| |
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| T |
39543642 |
ttccacaagaaagcagaaaaggactcgagttttgagcg |
39543679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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