View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0814_low_22 (Length: 359)
Name: NF0814_low_22
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 48753267 - 48753587
Alignment:
| Q |
30 |
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753267 |
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc |
48753366 |
T |
|
| Q |
130 |
t---tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg |
226 |
Q |
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| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48753367 |
tgcttactatatgctcaaagaagatgaatctccgtgcatttttggtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg |
48753466 |
T |
|
| Q |
227 |
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatg |
326 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
48753467 |
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcctagtgttgatg |
48753566 |
T |
|
| Q |
327 |
gtccaagtgagggagttccta |
347 |
Q |
| |
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||||||||||||||||||||| |
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| T |
48753567 |
gtccaagtgagggagttccta |
48753587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 347
Target Start/End: Original strand, 49051902 - 49052222
Alignment:
| Q |
30 |
cagaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc |
129 |
Q |
| |
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||||||| ||| |||| || |||| || ||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
49051902 |
cagaaaataactagagactcattcatttttctacctgtgaggtttatgggaaaactattggtagttttctctctaaagatagtcctcttcgtcatgatcc |
49052001 |
T |
|
| Q |
130 |
t---tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagagg |
226 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||| |
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| T |
49052002 |
tgcttactatatgctcaaagaagatgaatctccgtgcattttcggtccgatcgaaaagcaaagatggtcgtatgcatgtgcgaagcagttgattgaaagg |
49052101 |
T |
|
| Q |
227 |
ttgatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatg |
326 |
Q |
| |
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||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
49052102 |
ttgatttatggtgaaggtgatgaaaaggggttggagtttacaattgtgaggccttttaattggattgacccgagaatggatttcattcctggtgttgatg |
49052201 |
T |
|
| Q |
327 |
gtccaagtgagggagttccta |
347 |
Q |
| |
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||||||||||||||||||||| |
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|
| T |
49052202 |
gtccaagtgagggagttccta |
49052222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 32 - 347
Target Start/End: Complemental strand, 18136793 - 18136475
Alignment:
| Q |
32 |
gaaaacaacaagaggctagttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcct- |
130 |
Q |
| |
|
||||| |||||||| || ||||| || ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18136793 |
gaaaataacaagagactcgttcatttttctacatgtgaggttcatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcatgatcctg |
18136694 |
T |
|
| Q |
131 |
--tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggtt |
228 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
18136693 |
cttactatatgctcaaagaagatgaatcttcgtgcatttttggttcgatcgaaaatcaatgatggtcatatgcatgtgcaaagcaattgattgagaggtt |
18136594 |
T |
|
| Q |
229 |
gatttatggagaaggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggt |
328 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| || ||| | ||||||||||| |
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|
| T |
18136593 |
gatttatggtgaaggtgatgaaaatgggttggagtttacaattgtgagaccttttaattggattggaccaagaatggatctcgttcctagtgttgatggt |
18136494 |
T |
|
| Q |
329 |
ccaagtgagggagttccta |
347 |
Q |
| |
|
||||||||| ||||||||| |
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| T |
18136493 |
ccaagtgagagagttccta |
18136475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 5e-44; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 51 - 260
Target Start/End: Complemental strand, 15558602 - 15558391
Alignment:
| Q |
51 |
ttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatcc---ttactatatgctcaaaga |
147 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||| | |
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|
| T |
15558602 |
ttcacttctctacttgtgaagtatatgggaaaaccattggtagttttctccctaaagatagtcctattcgtcattatcctgtttactatatgcttaaa-a |
15558504 |
T |
|
| Q |
148 |
agatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgat |
247 |
Q |
| |
|
||||||||| | |||||| || || | ||| |||||||||||||||| ||| ||||||| ||||| |||| ||||||||| ||||| || ||||||| |
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|
| T |
15558503 |
agatgaatcaacatgcattctcggttcaatcaaaaagcaaagatggtcgtatacatgtgcaaagcagttgaatgagaggtttatttacggtgaaggtgcg |
15558404 |
T |
|
| Q |
248 |
gaaaatgggttgg |
260 |
Q |
| |
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|||||| |||||| |
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| T |
15558403 |
gaaaataggttgg |
15558391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 51 - 123
Target Start/End: Complemental strand, 20490044 - 20489972
Alignment:
| Q |
51 |
ttcacttctctacttgtgaagtgtatgggaaaactattggtagttttctccctaaagatagtcctcttcgtca |
123 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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|
| T |
20490044 |
ttcatttctctacttgtgaagtgtatgggaaaactattggtagttatcttcctaaagatagtcctcttcgtca |
20489972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 20489287 - 20489181
Alignment:
| Q |
131 |
tactatatgctcaaagaagatgaatctccgtgcattttcagtccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttga |
230 |
Q |
| |
|
||||||||||| |||||||||| ||||| ||||||||| || | ||||||||||| |||||||||||||||||||| ||||| |||||||||||| || |
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|
| T |
20489287 |
tactatatgcttaaagaagatgtgtctccatgcattttcggttcaatcgaaaagcagagatggtcatatgcatgtgcaaagcagttgattgagaggctgg |
20489188 |
T |
|
| Q |
231 |
tttatgg |
237 |
Q |
| |
|
||||||| |
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|
| T |
20489187 |
tttatgg |
20489181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 266
Target Start/End: Original strand, 15538440 - 15538627
Alignment:
| Q |
80 |
aaaactattggtagttttctccctaaagatagtcctcttcgtcaagatccttactat--atgctcaaagaagatgaatctccgtgcattttcagtccgat |
177 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| || |||||| ||| ||||| |||||| |||||||||| ||||||||| ||| ||| |
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|
| T |
15538440 |
aaaactattggtagttttctccctaaagatattcctcttcagcatgatcctgcttatgtatgcttaaagaaaatgaatctccatgcattttcggtctgat |
15538539 |
T |
|
| Q |
178 |
cgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaattta |
266 |
Q |
| |
|
| |||||| |||| ||| ||||||||||| | || |||||||| |||||| ||| || ||||||| ||||||| ||||||| |||| |
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| T |
15538540 |
cttaaagcagagatcgtcgtatgcatgtgcatatcagttgattgaagggttga-ttacggtgaaggtgttgaaaataggttggatttta |
15538627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 15565789 - 15565604
Alignment:
| Q |
75 |
atgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatc---cttactatatgctcaaagaagatgaatctccgtgcattttcag |
171 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |||||||| ||||||||| | |||||| | |
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|
| T |
15565789 |
atgggaaaactaccggtagttttctccctaaagatagtcctcttcagcatgatcctgcttagtatatgcttaaagaagatta----------attttcgg |
15565700 |
T |
|
| Q |
172 |
tccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
267 |
Q |
| |
|
|| ||||| |||||| |||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
|
|
| T |
15565699 |
tctgatcgtaaagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15565604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 75 - 267
Target Start/End: Complemental strand, 15578436 - 15578251
Alignment:
| Q |
75 |
atgggaaaactattggtagttttctccctaaagatagtcctcttcgtcaagatc---cttactatatgctcaaagaagatgaatctccgtgcattttcag |
171 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || |||| |||| |||||||| ||||||||| | |||||| | |
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|
| T |
15578436 |
atgggaaaactaccggtagttttctccctaaagatagtcctcttcagcatgatcctgcttagtatatgcttaaagaagatta----------attttcgg |
15578347 |
T |
|
| Q |
172 |
tccgatcgaaaagcaaagatggtcatatgcatgtgctaagcaattgattgagaggttgatttatggagaaggtgatgaaaatgggttggaatttac |
267 |
Q |
| |
|
|| ||||| |||||| |||||||| ||| ||||||| | || |||||||| ||||||||||| | ||||||| ||||||| ||||||| ||||| |
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|
| T |
15578346 |
tctgatcgtaaagcagagatggtcgtatccatgtgcatatcagttgattgaaaggttgatttacgatgaaggtgctgaaaataggttggagtttac |
15578251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 336
Target Start/End: Original strand, 19389507 - 19389574
Alignment:
| Q |
269 |
attgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtga |
336 |
Q |
| |
|
||||||||||||| ||| ||||||||||| |||||||| ||||||| ||| || |||||||||||||| |
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|
| T |
19389507 |
attgtgagaccttataactggattggaccaagaatggacttcattcctggagtggatggtccaagtga |
19389574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 242 - 345
Target Start/End: Complemental strand, 20489087 - 20488984
Alignment:
| Q |
242 |
ggtgatgaaaatgggttggaatttacaattgtgagaccttttaattggattggaccgagaatggatttcattcatggtgttgatggtccaagtgagggag |
341 |
Q |
| |
|
|||| |||||| || ||||| || ||||||||||| || ||||||||||| ||||| |||||||| ||||||| ||| |||| || ||||||||||| | |
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|
| T |
20489087 |
ggtgctgaaaacggcttggagttcacaattgtgaggccctttaattggatcggacctagaatggacttcattcccggtattgacggaccaagtgagggtg |
20488988 |
T |
|
| Q |
342 |
ttcc |
345 |
Q |
| |
|
|||| |
|
|
| T |
20488987 |
ttcc |
20488984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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