View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_27 (Length: 342)
Name: NF0814_low_27
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 39586700 - 39586953
Alignment:
| Q |
1 |
cgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39586700 |
cgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaagaaagcagaaaacgattcaagttt |
39586799 |
T |
|
| Q |
101 |
tgagcgcttaacgcttccactattatctgtgttggctagtaactgcatggcgttgagttcttcgcttgttacgtagtacatgcgacttattagtgggttg |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586800 |
tgagcgcttaacgcttccactattatttgtgttggctagtaactgcatggtgttgagttcttcgcttgttacgtagtacatgcgacttattagtgggttg |
39586899 |
T |
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| Q |
201 |
gttttaatatctaattcgggcttggattcaggtggtggaggtagatccgagatg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39586900 |
gttttaatatctaattcgggcttggattcaggtggtggaggtagatccgagatg |
39586953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39553593 - 39553806
Alignment:
| Q |
1 |
cgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttt |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| |||||||||||| || || ||||| |
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| T |
39553593 |
cgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttt |
39553692 |
T |
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| Q |
101 |
tgagcgcttaacgcttccac---tattatctgtgttggctagtaactgcatggcgttgagttcttcgcttgttacgtagtacatgcgacttattagtggg |
197 |
Q |
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| T |
39553693 |
tgagcgcttggaactaccaccattattgtttgagttggctagtgactgcatgttgttgagttctttgcttgttacatagtatatgcgacttattattggg |
39553792 |
T |
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| Q |
198 |
ttggttttaatatc |
211 |
Q |
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| T |
39553793 |
tcggttttaatatc |
39553806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 39543574 - 39543774
Alignment:
| Q |
1 |
cgtcaaccacaatccccatttttgcaacaacattttcactattggttgaagcggctgatgcaaccattttccacaggaaagcagaaaacgattcaagttt |
100 |
Q |
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|||||||||||| ||||||||||||||||| ||||||| ||||| ||||||| ||| |||||||||||||||| |||||||||||| || || ||||| |
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| T |
39543574 |
cgtcaaccacaagccccatttttgcaacaatattttcattattgattgaagccgcttcggcaaccattttccacaagaaagcagaaaaggactcgagttt |
39543673 |
T |
|
| Q |
101 |
tgagcgcttaacgcttccac---tattatctgtgttggctagtaactgcatggcgttgagttcttcgcttgttacgtagtacatgcgacttattagtggg |
197 |
Q |
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|||||| || || |||| |||| | || |||||| ||| |||||||| ||||||||||| ||||||||| || || ||||||||||||| |||| |
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| T |
39543674 |
tgagcgtttggaactaccaccattattgtttgagttggcaagtgactgcatgttgttgagttctttgcttgttacataatatatgcgacttattattggg |
39543773 |
T |
|
| Q |
198 |
t |
198 |
Q |
| |
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| |
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|
| T |
39543774 |
t |
39543774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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