View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_3 (Length: 611)

Name: NF0814_low_3
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_3
NF0814_low_3
[»] chr4 (7 HSPs)
chr4 (359-519)||(46305876-46306028)
chr4 (516-601)||(46306063-46306144)
chr4 (42-234)||(46304708-46304869)
chr4 (405-519)||(46025371-46025482)
chr4 (405-519)||(46262176-46262287)
chr4 (336-372)||(46305825-46305861)
chr4 (469-519)||(46306197-46306247)


Alignment Details
Target: chr4 (Bit Score: 110; Significance: 4e-55; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 359 - 519
Target Start/End: Original strand, 46305876 - 46306028
Alignment:
Q  359 aataatttgaaattataggaaaattgaggaatttatctagaagtgtgtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcac 458  Q
    |||||||  ||||||||| |||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||   |||||||||    
T  46305876 aataattaaaaattatag-aaaattgaggaatttatctagaagtgtgt----atcaaggaagcttctacaagtgtgtctagagttatc---tattagcac 46305967  T
Q  459 ctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46305968 ctgaaaattactccttgtacttgagatttgaaatcaagaaaattgtacgttttctagaaat 46306028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 516 - 601
Target Start/End: Original strand, 46306063 - 46306144
Alignment:
Q  516 aaattgtattaaggaagctcctacaagtgtgatatatagattaatcgattcctattttattttgtttttactcccatccatctctg 601  Q
    ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46306063 aaattgtattaaggaagctcctacaagtgtgata----gattaatcgattcctattttattttgtttttactcccatccatctctg 46306144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 46304708 - 46304869
Alignment:
Q  42 ccaatattcatcactttttgtctaaagatccaattactaattaatttgtctctattctctagaaccctaatttcaacatatatatctatttctcattccc 141  Q
    |||||||||||||||||||||||| ||||||||||||||   ||||| ||||||||||||| |||||||||||||||    ||||||||||||||         
T  46304708 ccaatattcatcactttttgtctatagatccaattacta---aatttatctctattctctacaaccctaatttcaac----atatctatttctca----- 46304795  T
Q  142 aaaaatcaatttctatgtttgagagattgtggaaaagatactgttcatagcacttcactttaacaaattattttttacttgtgacaatgttta 234  Q
                    |||||||||||||| |||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46304796 ----------------gtttgagagattgttgaaaag-ta--gttcatagcacttcactttaacaaattattttttacttgtgacaatgttta 46304869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 405 - 519
Target Start/End: Complemental strand, 46025482 - 46025371
Alignment:
Q  405 gtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgt 504  Q
    |||||||| ||||||||| |||||||||||| ||||||||||   ||||||||| || ||||| ||||||||||| || |||||||||||| ||||||||    
T  46025482 gtgtgtattaaggaagctcctacaagtgtgtatagagttatc---tattagcacttgtaaattcctccttgtactcgacatttgaaatcaataaaattgt 46025386  T
Q  505 acgttttctataaat 519  Q
    | |||||||| ||||    
T  46025385 aagttttctagaaat 46025371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 405 - 519
Target Start/End: Original strand, 46262176 - 46262287
Alignment:
Q  405 gtgtgtatcaaggaagcttctacaagtgtgtctagagttatcatctattagcacctgaaaattactccttgtacttgagatttgaaatcaagaaaattgt 504  Q
    |||||||| ||||||||| || ||||||||| ||||||||||   ||||||||| || ||||| ||||||||| | || |||||||||||| ||||||||    
T  46262176 gtgtgtattaaggaagctcctgcaagtgtgtatagagttatc---tattagcacttgtaaattcctccttgtagtcgacatttgaaatcaataaaattgt 46262272  T
Q  505 acgttttctataaat 519  Q
    | |||||||| ||||    
T  46262273 aagttttctagaaat 46262287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 336 - 372
Target Start/End: Original strand, 46305825 - 46305861
Alignment:
Q  336 aaggaatgttggaagcctcttataataatttgaaatt 372  Q
    ||||| |||||||||||||||||||||||||||||||    
T  46305825 aaggagtgttggaagcctcttataataatttgaaatt 46305861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 519
Target Start/End: Original strand, 46306197 - 46306247
Alignment:
Q  469 ctccttgtacttgagatttgaaatcaagaaaattgtacgttttctataaat 519  Q
    ||||||||||| || |||||||||||| ||||||||| |||||||| ||||    
T  46306197 ctccttgtactcgacatttgaaatcaataaaattgtaagttttctagaaat 46306247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University