View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_30 (Length: 324)
Name: NF0814_low_30
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 92 - 217
Target Start/End: Original strand, 15419489 - 15419614
Alignment:
| Q |
92 |
aaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcat |
191 |
Q |
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| T |
15419489 |
aaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatcgaacaacaattcat |
15419588 |
T |
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| Q |
192 |
atgctagctataactcatgtgataac |
217 |
Q |
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| T |
15419589 |
atgccagctataactcatgtgataac |
15419614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 116 - 217
Target Start/End: Original strand, 15432633 - 15432738
Alignment:
| Q |
116 |
tgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatg |
210 |
Q |
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| T |
15432633 |
tgagggttcattcagaacctgttacatcaattaattccgcctttgtcaagggtcagaaaatccactgtaacaac-attcatatgaaagctataactcatg |
15432731 |
T |
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| Q |
211 |
tgataac |
217 |
Q |
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||||||| |
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| T |
15432732 |
tgataac |
15432738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 217
Target Start/End: Complemental strand, 17682651 - 17682524
Alignment:
| Q |
94 |
ggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaatt |
188 |
Q |
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| T |
17682651 |
ggaataatgagtccaatgttaa---gggttcattcagaacctgttacatcaatttattccgcctttgtctagggtctgaaaatccactggaacaacaatt |
17682555 |
T |
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| Q |
189 |
catatgctagc--tataactcatgtgataac |
217 |
Q |
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| T |
17682554 |
catatgccagctatataactcatgtgataac |
17682524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 217
Target Start/End: Complemental strand, 15080787 - 15080695
Alignment:
| Q |
130 |
gaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaacaattcatatgctagctataactcatgtgataac |
217 |
Q |
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| T |
15080787 |
gaacctgttacaacaattcattccgtctttgacaagggtcagaaaatccactggaacaacaattcatatgccagctataactcatgtgataac |
15080695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 217
Target Start/End: Original strand, 14662587 - 14662713
Alignment:
| Q |
90 |
caaaggaataatgagtccaatgctaatgagggttcattaagaacctgttacaacaattaattccgcctttgtcaagtgtcaaaaaatc-----gaacaac |
184 |
Q |
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| T |
14662587 |
caaaggaataatttgtccaatgctaa---gggttttttcagaatcttttacatcaattaattccgcctatgt-aagggtcagaaaatccactggaacaa- |
14662681 |
T |
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| Q |
185 |
aattcatatgctagctataactcatgtgataac |
217 |
Q |
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|||||||||| ||||||||||||||||||||| |
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| T |
14662682 |
-attcatatgccagctataactcatgtgataac |
14662713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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