View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_31 (Length: 317)

Name: NF0814_low_31
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_31
NF0814_low_31
[»] chr4 (6 HSPs)
chr4 (30-306)||(45974442-45974723)
chr4 (30-228)||(45857200-45857399)
chr4 (30-228)||(45869754-45869952)
chr4 (30-228)||(45980884-45981083)
chr4 (86-231)||(45969985-45970131)
chr4 (30-81)||(45965038-45965089)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 306
Target Start/End: Original strand, 45974442 - 45974723
Alignment:
Q  30 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcat-----gttggtatcaacctttcccatcttcattcgaagttctaatcggtt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||| ||||    
T  45974442 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgtcatgttggtatcaacctttcccatcttcattcgaagttctaataggtt 45974541  T
Q  125 gtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcag 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45974542 gtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcag 45974641  T
Q  225 aaaataaaatttctattccttcctaacttaatnnnnnnnntaatgccgatctccataaaaaagttggcatcatttggttcat 306  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||    
T  45974642 aaaataaaatttctattccttcctaacttaataaaaaaaataatgccgatctccataaaaaagttggcatcatttggttcat 45974723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 45857399 - 45857200
Alignment:
Q  30 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca 128  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |  | ||| |||    
T  45857399 ttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcagttatca 45857300  T
Q  129 cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa 228  Q
       |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  45857299 tgatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa 45857200  T

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Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 30 - 228
Target Start/End: Complemental strand, 45869952 - 45869754
Alignment:
Q  30 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca 128  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||| |  |||| ||||    
T  45869952 ttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttcattcgaagttctgaggcggtagtca 45869853  T
Q  129 cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa 228  Q
       |||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  45869852 tgatctcta-aggaacacaatcataattgtaaaaatctactgacttaaagttcaacatataatattagctaataatttgttaataatttcaatcagaaaa 45869754  T

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Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 228
Target Start/End: Original strand, 45980884 - 45981083
Alignment:
Q  30 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgttggtatcaacctttcccatcttcattcgaagttctaat-cggttgtca 128  Q
    |||||||||||| |||||||||||||||||||||| ||| |||||||| |||||||    | |||||| ||||| | | |||||||| |  |||||||||    
T  45980884 ttattgttgtcaatcctttttgctttcatttttccggtcccttcaatcttgttggtggttagctttcctatcttgagttgaagttctgaggcggttgtca 45980983  T
Q  129 cagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataatttgttgataattttaatcagaaaa 228  Q
     | ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| ||||||| ||||||||||    
T  45980984 taatctctgcaggaacacaaccataaatgtaaaaatctactgacttaaagttcaacatataatattagctaatagtttgttaataatttcaatcagaaaa 45981083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 86 - 231
Target Start/End: Original strand, 45969985 - 45970131
Alignment:
Q  86 atcaacctttcccatcttcattcgaagttctaatcgg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaac 184  Q
    ||||||||||||||||||||||||||||||  |  || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| |||    
T  45969985 atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac 45970084  T
Q  185 atataatattaggtaataatttgttgataattttaatcagaaaataa 231  Q
    ||||||  |||| ||||||||| ||| ||||||||||||||||||||    
T  45970085 atataacgttagctaataattttttgttaattttaatcagaaaataa 45970131  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 45965038 - 45965089
Alignment:
Q  30 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45965038 ttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt 45965089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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