View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_33 (Length: 316)

Name: NF0814_low_33
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_33
NF0814_low_33
[»] chr6 (10 HSPs)
chr6 (1-231)||(18151158-18151397)
chr6 (231-301)||(22958658-22958728)
chr6 (231-301)||(23829664-23829734)
chr6 (231-302)||(18140366-18140434)
chr6 (235-302)||(23841884-23841948)
chr6 (233-302)||(12744452-12744520)
chr6 (99-152)||(22993096-22993149)
chr6 (99-152)||(23795249-23795302)
chr6 (63-101)||(22993195-22993233)
chr6 (63-101)||(23795165-23795203)
[»] chr8 (5 HSPs)
chr8 (231-306)||(23644770-23644844)
chr8 (233-302)||(33879701-33879769)
chr8 (233-299)||(23946245-23946310)
chr8 (272-301)||(22173091-22173120)
chr8 (234-302)||(39659046-39659113)
[»] scaffold0520 (1 HSPs)
scaffold0520 (239-302)||(11495-11557)
[»] chr5 (2 HSPs)
chr5 (233-300)||(22939524-22939590)
chr5 (233-302)||(2454242-2454310)
[»] chr3 (4 HSPs)
chr3 (231-302)||(47052501-47052570)
chr3 (233-302)||(10960850-10960918)
chr3 (233-302)||(10964357-10964425)
chr3 (233-298)||(9155763-9155827)
[»] scaffold0043 (1 HSPs)
scaffold0043 (233-302)||(12241-12309)
[»] scaffold1755 (1 HSPs)
scaffold1755 (233-302)||(1079-1147)
[»] scaffold0083 (1 HSPs)
scaffold0083 (233-301)||(26923-26990)
[»] chr4 (2 HSPs)
chr4 (233-302)||(26062016-26062084)
chr4 (233-299)||(5671521-5671586)
[»] chr2 (1 HSPs)
chr2 (242-299)||(24236028-24236084)
[»] chr1 (1 HSPs)
chr1 (233-295)||(49717339-49717400)
[»] chr7 (1 HSPs)
chr7 (233-299)||(45289580-45289645)


Alignment Details
Target: chr6 (Bit Score: 171; Significance: 8e-92; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18151397 - 18151158
Alignment:
Q  1 aaaattaccgtaatgacagatgcagnnnnnnntatagaagatttaaaaaacttctgattcaatcaatatacca---------gaatgtttgttgaaaatt 91  Q
    ||||||||||||||||||||| |||       |||| |||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  18151397 aaaattaccgtaatgacagatacagaaaaaaatataaaagatttaaaaaacttctgattcaatcaatatacctaatatacctgaatgtttgttgaaaatt 18151298  T
Q  92 taacaatatccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataaccaccagatagagggaagagatgtatcaaaatttccgtta 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  18151297 taacaatatccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataaccaccagatagagggaagagatgtattaaaatttccgtta 18151198  T
Q  192 tgtgacgcaacaccggaaaaagggtaatatacataaacat 231  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18151197 tgtgacgcaacaccggaaaaagggtaatatacataaacat 18151158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 231 - 301
Target Start/End: Complemental strand, 22958728 - 22958658
Alignment:
Q  231 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacccc 301  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22958728 tagaattcgaactctcccacattagagaaaggacatgcacccttctgcacacgagtgatttccttaacccc 22958658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 231 - 301
Target Start/End: Original strand, 23829664 - 23829734
Alignment:
Q  231 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacccc 301  Q
    |||||||  ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23829664 tagaattcgaactctcccacattagagaaaggacatgcacccttctgcacacgagtgatttccttaacccc 23829734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 18140366 - 18140434
Alignment:
Q  231 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||||||| |||||||||||| | ||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  18140366 tagaatttgaactctcccaccgttgagaa-ggacatgcacccttctgcac--gagtgatttccttaaccccc 18140434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 23841884 - 23841948
Alignment:
Q  235 atttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||| |||||||||||||| ||||| |||||||||| |||||||||  ||||||||||||||||||||    
T  23841884 atttgaactctcccacctttgagaa-ggacatgcacccttctgcac--gagtgatttccttaaccccc 23841948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 12744520 - 12744452
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||||| ||||||||||||||| ||||||||| ||| | |||||| ||||||||||||||||||||    
T  12744520 gaatttaaactttcccaccttagagaa-ggacatgca-tctatttgcacaagagtgatttccttaaccccc 12744452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 22993149 - 22993096
Alignment:
Q  99 atccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataac 152  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||||| ||||    
T  22993149 atccacaacgactatcctaggtgctccaaaagcacgagccgaaagcattgtaac 22993096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 23795249 - 23795302
Alignment:
Q  99 atccacaacgactatcctaggtgccccaaaagtgcgagctgaaagcattataac 152  Q
    |||||||||||||||||||||||| |||||||  ||||| ||||||||| ||||    
T  23795249 atccacaacgactatcctaggtgctccaaaagcacgagccgaaagcattgtaac 23795302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 22993233 - 22993195
Alignment:
Q  63 tcaatataccagaatgtttgttgaaaatttaacaatatc 101  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  22993233 tcaatatacctgaatgtttgttgaaactttaacaatatc 22993195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 23795165 - 23795203
Alignment:
Q  63 tcaatataccagaatgtttgttgaaaatttaacaatatc 101  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  23795165 tcaatatacctgaatgtttgttgaaactttaacaatatc 23795203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 231 - 306
Target Start/End: Complemental strand, 23644844 - 23644770
Alignment:
Q  231 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccctttg 306  Q
    |||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||    
T  23644844 tagaatttgaactctcccaccttagagaa-ggacattcacccttctgcacacgagtgatttccttaaccccctttg 23644770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 33879701 - 33879769
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| |||||||||||||||    
T  33879701 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaaccccc 33879769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 23946245 - 23946310
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 299  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  23946245 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 23946310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 301
Target Start/End: Original strand, 22173091 - 22173120
Alignment:
Q  272 cttctgcacacgagtgatttccttaacccc 301  Q
    ||||||||||||||||||||||||||||||    
T  22173091 cttctgcacacgagtgatttccttaacccc 22173120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Original strand, 39659046 - 39659113
Alignment:
Q  234 aatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||||||  |||| ||||||||| ||||||||||||  | | ||||||||||||||||| |||||||||    
T  39659046 aatttaagatctctcaccttaga-aaaggacatgcatccatttgcacacgagtgatttctttaaccccc 39659113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 11495 - 11557
Alignment:
Q  239 aaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  11495 aaactctcccaacttagagaa-ggacatgcacccttctgcacacgagtgatttccttaatcccc 11557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 300
Target Start/End: Original strand, 22939524 - 22939590
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccc 300  Q
    |||||||| |||||||||||||||||| | || ||||| |||||||||||||||||||||||||||||    
T  22939524 gaatttaagctctcccaccttagagaatg-acgtgcacccttctgcacacgagtgatttccttaaccc 22939590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 2454310 - 2454242
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 302  Q
    |||| |||||||||||||||||||| ||||||||||| ||| | |||||| || |||||||||||||||||    
T  2454310 gaatataaactctcccaccttagag-aaggacatgca-tctatttgcacaagaatgatttccttaaccccc 2454242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 47052570 - 47052501
Alignment:
Q  231 tagaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||| ||||||||||    
T  47052570 tagaatttgaactctcccac-ttagagaa-ggacatgcacccttctgcacacgagtgattttcttaaccccc 47052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 10960918 - 10960850
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  10960918 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaaccccc 10960850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 10964425 - 10964357
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||||||||    
T  10964425 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaaccccc 10964357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 298
Target Start/End: Complemental strand, 9155827 - 9155763
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaac 298  Q
    ||||||||||||||||||||||||  ||||||||||| ||| | |||||| ||||||||||||||||    
T  9155827 gaatttaaactctcccaccttaga-taaggacatgca-tctatttgcacaagagtgatttccttaac 9155763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 12309 - 12241
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||||||||||||||||||| ||||||||||| ||| | |||||| ||||||||||||||||||||    
T  12309 gaatttaaactctcccaccttagag-aaggacatgca-tctatttgcacaagagtgatttccttaaccccc 12241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1755 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1755
Description:

Target: scaffold1755; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 1147 - 1079
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    |||||||| ||||||||||||||| ||||||||||||| | | ||||||||||| ||||| |||||||||    
T  1147 gaatttaagctctcccaccttaga-aaaggacatgcacccatttgcacacgagttatttctttaaccccc 1079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Complemental strand, 26990 - 26923
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactct-tctgcacacgagtgatttccttaacccc 301  Q
    ||||||||||||||||||||||||| ||||||||||| ||| | |||||| |||||||||||||||||||    
T  26990 gaatttaaactctcccaccttagag-aaggacatgca-tctatttgcacaagagtgatttccttaacccc 26923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 26062016 - 26062084
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaaccccc 302  Q
    ||||||||  ||||||||||||||||| |||||||||  | |||||||||||||||||||||||| ||||    
T  26062016 gaatttaagatctcccaccttagagaa-ggacatgcatccatctgcacacgagtgatttccttaatcccc 26062084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 5671586 - 5671521
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 299  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  5671586 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 5671521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 299
Target Start/End: Complemental strand, 24236084 - 24236028
Alignment:
Q  242 ctctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 299  Q
    ||||||||||||| |||| |||||||| | ||||||||||||||||||||||||||||    
T  24236084 ctctcccaccttaaagaa-ggacatgctcccttctgcacacgagtgatttccttaacc 24236028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 295
Target Start/End: Complemental strand, 49717400 - 49717339
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttcctt 295  Q
    |||||||| |||| ||||||||||||| ||||||||| || ||| ||||||||||||||||||    
T  49717400 gaatttaagctcttccaccttagagaa-ggacatgcattcatcttcacacgagtgatttcctt 49717339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 299
Target Start/End: Original strand, 45289580 - 45289645
Alignment:
Q  233 gaatttaaactctcccaccttagagaaaggacatgcactcttctgcacacgagtgatttccttaacc 299  Q
    |||||||| |||||||||||||||| |||||| ||||  | | ||||||||||| ||||||||||||    
T  45289580 gaatttaagctctcccaccttagag-aaggacgtgcatccatttgcacacgagttatttccttaacc 45289645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University