View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0814_low_35 (Length: 308)
Name: NF0814_low_35
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 292
Target Start/End: Complemental strand, 45974723 - 45974442
Alignment:
| Q |
16 |
atgaaccaaatgatgccaacttttttatggagatcggcattannnnnnnnattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974723 |
atgaaccaaatgatgccaacttttttatggagatcggcattattttttttattaagttaggaaggaatagaaattttattttctgattaaaattatcaac |
45974624 |
T |
|
| Q |
116 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaaccgattagaacttcga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
45974623 |
aaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactgtgacaacctattagaacttcga |
45974524 |
T |
|
| Q |
216 |
atgaagatgggaaaggttgataccaac-----atgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974523 |
atgaagatgggaaaggttgataccaacatgacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
45974442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 45857200 - 45857399
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45857200 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacatttatgattgtgttcctgtagagatca |
45857299 |
T |
|
| Q |
194 |
tgacaaccg-attagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
||| ||| | | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45857300 |
tgataactgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45857399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 94 - 292
Target Start/End: Original strand, 45869754 - 45869952
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||| |
|
|
| T |
45869754 |
ttttctgattgaaattattaacaaattattagctaatattatatgttgaactttaagtcagtagatttttacaattatgattgtgttcct-tagagatca |
45869852 |
T |
|
| Q |
194 |
tgacaaccg-attagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
|||| |||| | ||||||||||||||||||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
45869853 |
tgactaccgcctcagaacttcgaatgaagatgggaaagcttaacaccaacatgattgaagagacaggaaaagtgaaagcaaaaaggattgacaacaataa |
45869952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 94 - 292
Target Start/End: Complemental strand, 45981083 - 45980884
Alignment:
| Q |
94 |
ttttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagagactg |
193 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || ||||| | |
|
|
| T |
45981083 |
ttttctgattgaaattattaacaaactattagctaatattatatgttgaactttaagtcagtagatttttacatttatggttgtgttcctgcagagatta |
45980984 |
T |
|
| Q |
194 |
tgacaaccg-attagaacttcgaatgaagatgggaaaggttgataccaacatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
||||||||| | |||||||| | | ||||| |||||| | ||||||| |||||||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
45980983 |
tgacaaccgcctcagaacttcaactcaagataggaaagctaaccaccaacaagattgaagggaccggaaaaatgaaagcaaaaaggattgacaacaataa |
45980884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 45970131 - 45969985
Alignment:
| Q |
91 |
ttattttctgattaaaattatcaacaaattattacctaatattatatgttgaactttaagtcagtatatttttacatttatgattgtgttcttgtagaga |
190 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
45970131 |
ttattttctgattaaaattaacaaaaaattattagctaacgttatatgttaaactttaagtcagtagatttttacatttatgattgtgttcctgtagaga |
45970032 |
T |
|
| Q |
191 |
ctgtgacaa-ccgattagaacttcgaatgaagatgggaaaggttgat |
236 |
Q |
| |
|
| |||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
45970031 |
ttatgacaaccccctcggaacttcgaatgaagatgggaaaggttgat |
45969985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 45965089 - 45965038
Alignment:
| Q |
241 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45965089 |
acatgattgaagagacaggaaaaatgaaagcaaaaaggaatgacaacaataa |
45965038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University