View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_39 (Length: 295)
Name: NF0814_low_39
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 45974995 - 45974748
Alignment:
| Q |
11 |
cataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacat |
110 |
Q |
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| T |
45974995 |
cataggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacat |
45974896 |
T |
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| Q |
111 |
gctatttaggttcacattgaacctttttcctgctacaggggcgctactatgaaccttatttgacaaagttttttacaaaatagcgtatcacggaaaaaga |
210 |
Q |
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| T |
45974895 |
gctatttaggttcacattgaacctttttcctgctacaggggcgctactatgaatcttatttgacaaagttttttacaaaatagcgtatcacggaaaaaga |
45974796 |
T |
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| Q |
211 |
gcaatatgttcaaattctcttatgctataagactaacgctgctatagc |
258 |
Q |
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| T |
45974795 |
gcaatatgttcaaattctcttatgctataagactaacgctgctatagc |
45974748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 45970455 - 45970242
Alignment:
| Q |
15 |
ggtcaggatgttaataccgtgaaccttattaagggagaaaccactgttatcaaacgctgaacaatagtgctatgttaaaattctgttacgcgacatgcta |
114 |
Q |
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| T |
45970455 |
ggtcaggatgttaataccgtgaaccttattaaggaagaaataactgtaaccaaactcttatcaatagtgctacattaaaattatgttacgcggcatgcta |
45970356 |
T |
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| Q |
115 |
tttaggttcacattgaacctttttcctgctacaggggcgctactatgaaccttatttgacaaagttttttacaaaatagcgtatcacggaaaaagagcaa |
214 |
Q |
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| T |
45970355 |
tttaggttcacagtgaatattgttcctgctattgcggcgctactgtgaaccttattcg----agttttttactaaatagtgtttcacggaaaaagagcaa |
45970260 |
T |
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| Q |
215 |
tatgttcaaattctctta |
232 |
Q |
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| T |
45970259 |
tatgttctaattctctta |
45970242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 295
Target Start/End: Complemental strand, 45974730 - 45974700
Alignment:
| Q |
265 |
cggagaaatgaaccaaatgatgccaactttt |
295 |
Q |
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| T |
45974730 |
cggagaaatgaaccaaatgatgccaactttt |
45974700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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