View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_40 (Length: 293)

Name: NF0814_low_40
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_40
NF0814_low_40
[»] chr1 (5 HSPs)
chr1 (13-293)||(47574635-47574921)
chr1 (15-165)||(47584337-47584487)
chr1 (223-289)||(47584535-47584602)
chr1 (43-85)||(47607373-47607415)
chr1 (42-85)||(47593107-47593150)
[»] chr5 (3 HSPs)
chr5 (15-70)||(470074-470129)
chr5 (43-82)||(22689341-22689380)
chr5 (15-76)||(454543-454604)
[»] chr7 (4 HSPs)
chr7 (24-82)||(20231535-20231593)
chr7 (24-82)||(20279503-20279561)
chr7 (46-82)||(20168098-20168134)
chr7 (46-82)||(20264016-20264052)
[»] chr2 (9 HSPs)
chr2 (46-82)||(2707324-2707360)
chr2 (45-82)||(2682031-2682068)
chr2 (46-82)||(2717094-2717130)
chr2 (46-82)||(2723716-2723752)
chr2 (252-292)||(31176867-31176907)
chr2 (252-292)||(31188162-31188202)
chr2 (252-292)||(31196218-31196258)
chr2 (252-292)||(31214830-31214870)
chr2 (252-292)||(31229647-31229687)
[»] scaffold0090 (1 HSPs)
scaffold0090 (43-82)||(8284-8323)
[»] chr4 (2 HSPs)
chr4 (45-83)||(48484012-48484050)
chr4 (46-82)||(40823849-40823885)
[»] chr3 (1 HSPs)
chr3 (43-76)||(1077389-1077422)
[»] chr8 (1 HSPs)
chr8 (33-85)||(10401663-10401715)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 47574635 - 47574921
Alignment:
Q  13 tgaaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatac 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47574635 tgaaacctagcgatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatac 47574734  T
Q  113 atgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaatttctcatgtctattactttattttacctaaaaataattttc---- 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  47574735 atgcacaattgtagggacatagtaagtttctaattcctactttacttcattcaatttctcatgtctattactttattttacctaaaaataattttcattc 47574834  T
Q  209 --attcattgatgcccactaaacaggctttcttgttttcatatgtagtggatatatatctccagaatatgcaatgcatggatatttt 293  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  47574835 atattcattgatgcccactaaacaggctttcttgttttcatatgtagtggatatatatctccataatatgcaatgcatggatatttt 47574921  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 165
Target Start/End: Original strand, 47584337 - 47584487
Alignment:
Q  15 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgtatcagtagatcaaattgaagaaaatacat 114  Q
    ||||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||  || |    
T  47584337 aaacctagcaatgtcttattagatagtaacatgaacccaaaaatatcagattttggcatggctagaattgtatctatagatcaaattgaagaaagcacgt 47584436  T
Q  115 gcacaattgtagggacatagtaagtttctaattcctactttacttcattca 165  Q
    |||| |||||||| |||||||||| ||   ||||||||||||||| |||||    
T  47584437 gcacgattgtaggaacatagtaagcttacgattcctactttactttattca 47584487  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 47584535 - 47584602
Alignment:
Q  223 actaaacaggctttcttgtttt-catatgtagtggatatatatctccagaatatgcaatgcatggata 289  Q
    ||||||||  |||||| ||||| ||||| |||||| |||||||||||||||||||| |||||||||||    
T  47584535 actaaacaaactttctcgtttttcatatatagtggttatatatctccagaatatgccatgcatggata 47584602  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 47607373 - 47607415
Alignment:
Q  43 atatgaatccaaaaatatcagattttggcatggctagaattgt 85  Q
    |||||||||| ||||| ||||||||||||||||||||||||||    
T  47607373 atatgaatcctaaaatctcagattttggcatggctagaattgt 47607415  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 85
Target Start/End: Original strand, 47593107 - 47593150
Alignment:
Q  42 aatatgaatccaaaaatatcagattttggcatggctagaattgt 85  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||    
T  47593107 aatatgaatcctaaaatatcagattttggaatggctaggattgt 47593150  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 70
Target Start/End: Complemental strand, 470129 - 470074
Alignment:
Q  15 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttgg 70  Q
    ||||||||||||||  |||||||||  || ||||||||||||||||||||||||||    
T  470129 aaacctagcaatgtattgttagatgacaaaatgaatccaaaaatatcagattttgg 470074  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 22689380 - 22689341
Alignment:
Q  43 atatgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||| || |||||||||||||||||||||||    
T  22689380 atatgaatccaaagatttcagattttggcatggctagaat 22689341  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 454604 - 454543
Alignment:
Q  15 aaacctagcaatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggc 76  Q
    |||||||||||| |  ||||||||   ||||||||||||||||||||||| ||||| |||||    
T  454604 aaacctagcaatatattgttagataagaatatgaatccaaaaatatcagactttggtatggc 454543  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 20231535 - 20231593
Alignment:
Q  24 aatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||||||  ||  ||||||||||||||||||| ||||| |||||||||||    
T  20231535 aatgtcctgttagatgagaagttgaatccaaaaatatcagactttggtatggctagaat 20231593  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 20279503 - 20279561
Alignment:
Q  24 aatgtcctgttagatggtaatatgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||||||   |  ||||||||||||||||||| ||||| |||||||||||    
T  20279503 aatgtcctgttagatgaggagctgaatccaaaaatatcagactttggtatggctagaat 20279561  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 20168134 - 20168098
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  20168134 tgaatccaaaaatatcagaatttggtatggctagaat 20168098  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 20264016 - 20264052
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  20264016 tgaatccaaaaatatcagactttggtatggctagaat 20264052  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2707360 - 2707324
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    |||||||||||||||| ||||||||||||||||||||    
T  2707360 tgaatccaaaaatatctgattttggcatggctagaat 2707324  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 2682068 - 2682031
Alignment:
Q  45 atgaatccaaaaatatcagattttggcatggctagaat 82  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2682068 atgaatccaaaaatatcagactttgggatggctagaat 2682031  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2717130 - 2717094
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    |||||||||||||||| || |||||||||||||||||    
T  2717130 tgaatccaaaaatatccgactttggcatggctagaat 2717094  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 2723752 - 2723716
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    |||||||||||||||| || |||||||||||||||||    
T  2723752 tgaatccaaaaatatccgactttggcatggctagaat 2723716  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31176907 - 31176867
Alignment:
Q  252 agtggatatatatctccagaatatgcaatgcatggatattt 292  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  31176907 agtggatatatggctccagaatatgcaatgcacggatattt 31176867  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31188202 - 31188162
Alignment:
Q  252 agtggatatatatctccagaatatgcaatgcatggatattt 292  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  31188202 agtggatatatggctccagaatatgcaatgcacggatattt 31188162  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31196258 - 31196218
Alignment:
Q  252 agtggatatatatctccagaatatgcaatgcatggatattt 292  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  31196258 agtggatatatggctccagaatatgcaatgcacggatattt 31196218  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31214870 - 31214830
Alignment:
Q  252 agtggatatatatctccagaatatgcaatgcatggatattt 292  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  31214870 agtggatatatggctccagaatatgcaatgcacggatattt 31214830  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 31229687 - 31229647
Alignment:
Q  252 agtggatatatatctccagaatatgcaatgcatggatattt 292  Q
    |||||||||||  ||||||||||||||||||| ||||||||    
T  31229687 agtggatatatggctccagaatatgcaatgcacggatattt 31229647  T

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Target: scaffold0090 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 8323 - 8284
Alignment:
Q  43 atatgaatccaaaaatatcagattttggcatggctagaat 82  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  8323 atatgaatcccaaaatttcagattttggcatggctagaat 8284  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 83
Target Start/End: Complemental strand, 48484050 - 48484012
Alignment:
Q  45 atgaatccaaaaatatcagattttggcatggctagaatt 83  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  48484050 atgaatccaaagatatcagattttggtatggctagaatt 48484012  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Complemental strand, 40823885 - 40823849
Alignment:
Q  46 tgaatccaaaaatatcagattttggcatggctagaat 82  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  40823885 tgaatccaaaaatatcagactttggtatggctagaat 40823849  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 1077389 - 1077422
Alignment:
Q  43 atatgaatccaaaaatatcagattttggcatggc 76  Q
    ||||||||||||||||||||||||||||| ||||    
T  1077389 atatgaatccaaaaatatcagattttggcttggc 1077422  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 10401715 - 10401663
Alignment:
Q  33 ttagatggtaatatgaatccaaaaatatcagattttggcatggctagaattgt 85  Q
    |||||||  ||||||| |||||||||||||||||||||  | |||||||||||    
T  10401715 ttagatgaaaatatgattccaaaaatatcagattttggtcttgctagaattgt 10401663  T

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