View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_44 (Length: 277)
Name: NF0814_low_44
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 10192214 - 10192475
Alignment:
| Q |
1 |
aagtatggttagtttcaaatgattgaacaagcttgatttgtttgtgcagttttagtgtttagattagattaattaggattgttctgaaattatttgaagg |
100 |
Q |
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| T |
10192214 |
aagtatggttagtttcaaatgattgaacaagcttgatttgtttgtgcagttatagtgtttagattagattaattaggattgttctgaaattatttgaagg |
10192313 |
T |
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| Q |
101 |
ctcatatgaaccttccaagtaattaaaatttaatgtgatgtagtcatagatagct-nnnnnnnntttcctctttgtatacttttgtaatgttatcctata |
199 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
10192314 |
ctcatatgaaccttccaagttattaaaatttaatgtgatgtagtcatagatagctaaaaaaaaaattccagtttgtatacttttgtaatgttatcctata |
10192413 |
T |
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| Q |
200 |
tgattatggaagaaaatatttgatttgttacacaattttatactttcatctttactgaaaca |
261 |
Q |
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| T |
10192414 |
tgattatggaagaaaatatttgatttgttacacaattttatactttcttctttactgaaaca |
10192475 |
T |
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