View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_46 (Length: 269)
Name: NF0814_low_46
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_46 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 269
Target Start/End: Original strand, 19155509 - 19155774
Alignment:
| Q |
16 |
taaaatccttaccttccttcaacaagttcctccttgaacttgagatactcggcagcacgaagttcatcgacaacaaggctgtgcacatcaactctaagat |
115 |
Q |
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| T |
19155509 |
taaaatccttaccttccttcaacaagttcctccttgaacttgagatactcggcagcacgaagttcatcgacaacaaggctgtgcacatcaactcttagat |
19155608 |
T |
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| Q |
116 |
actcccaaacaccgggccttggacgaacagcaagagcaacaaatggtggcaacactacagcttcctacacaacacaaaccaaa----------agaagac |
205 |
Q |
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| T |
19155609 |
actcccaaacaccgggccttgggcgaacagcaagagcaacaaatggtggcaatactacagcttcctacacaacacaaaccaaaagaaaacttgagaaaac |
19155708 |
T |
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| Q |
206 |
tcttaacaaactccaccaa--atatagatccattgaaacacaaaaagtactaataaacaatatatc |
269 |
Q |
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| T |
19155709 |
tcttaacaaactccaccaaatatatagattcattgtaacacaaaaagtactaataaacaatatatc |
19155774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 182
Target Start/End: Complemental strand, 51650148 - 51649990
Alignment:
| Q |
24 |
ttaccttccttcaacaagttcctccttgaacttgagatactcggcagcacgaagttcatcgacaacaaggctgtgcacatcaactctaagatactcccaa |
123 |
Q |
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| T |
51650148 |
ttaccttccatcaacaagttcttccttgaatttgagaaactcagcaggttgcaaattttcaacaacaagagcatgcacatttactctcagatactcccaa |
51650049 |
T |
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| Q |
124 |
acaccgggccttggacgaacagcaagagcaacaaatggtggcaacactacagcttccta |
182 |
Q |
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| T |
51650048 |
atacctggccttggacgaacagcaagtgcaacccatggtggcaaaactattgcttccta |
51649990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 55866833 - 55866908
Alignment:
| Q |
97 |
tgcacatcaactctaagatactcccaaacaccgggccttggacgaacagcaagagcaacaaatggtggcaacacta |
172 |
Q |
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| T |
55866833 |
tgcacattcactcttagataatcccaaatacctggccttagacgaacagcaagagcaacccatggtggcaaaacta |
55866908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 29143930 - 29143870
Alignment:
| Q |
106 |
actctaagatactcccaaacaccgggccttggacgaacagcaagagcaacaaatggtggca |
166 |
Q |
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| T |
29143930 |
actcttagatactctcaaatacctggcattagacgaacagcaagagcaacccatggtggca |
29143870 |
T |
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