View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_47 (Length: 268)

Name: NF0814_low_47
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_47
NF0814_low_47
[»] chr8 (15 HSPs)
chr8 (13-268)||(7992322-7992576)
chr8 (13-176)||(8007436-8007599)
chr8 (13-194)||(8035180-8035362)
chr8 (15-194)||(8044292-8044476)
chr8 (15-174)||(39547887-39548046)
chr8 (13-167)||(2743153-2743308)
chr8 (13-194)||(18265228-18265408)
chr8 (13-194)||(18274241-18274421)
chr8 (23-125)||(8021179-8021281)
chr8 (13-62)||(8050735-8050784)
chr8 (55-163)||(23038881-23038989)
chr8 (49-119)||(12838942-12839012)
chr8 (87-124)||(1170802-1170839)
chr8 (24-113)||(4516104-4516193)
chr8 (83-112)||(35370417-35370446)
[»] chr1 (5 HSPs)
chr1 (13-194)||(24197808-24197988)
chr1 (14-194)||(12139793-12139971)
chr1 (13-116)||(49550173-49550276)
chr1 (83-163)||(17633467-17633547)
chr1 (53-109)||(630234-630290)
[»] chr5 (3 HSPs)
chr5 (41-171)||(28462796-28462925)
chr5 (87-153)||(23936629-23936695)
chr5 (13-63)||(35677313-35677363)
[»] chr2 (4 HSPs)
chr2 (15-157)||(38016097-38016239)
chr2 (18-176)||(33202258-33202414)
chr2 (87-123)||(3048294-3048330)
chr2 (205-265)||(33202152-33202212)
[»] chr3 (7 HSPs)
chr3 (14-157)||(20002222-20002365)
chr3 (14-158)||(32933342-32933486)
chr3 (87-152)||(49757818-49757883)
chr3 (14-158)||(34804634-34804778)
chr3 (87-155)||(3942241-3942309)
chr3 (37-124)||(23884316-23884403)
chr3 (24-121)||(29126213-29126310)
[»] chr6 (2 HSPs)
chr6 (13-187)||(4919051-4919219)
chr6 (45-109)||(2697674-2697738)
[»] chr4 (5 HSPs)
chr4 (13-121)||(8714233-8714341)
chr4 (85-156)||(42874128-42874199)
chr4 (49-158)||(2685475-2685580)
chr4 (13-76)||(23404701-23404764)
chr4 (87-123)||(3001055-3001091)
[»] chr7 (7 HSPs)
chr7 (13-131)||(19736388-19736505)
chr7 (29-113)||(35217553-35217637)
chr7 (13-124)||(18891764-18891875)
chr7 (39-158)||(25546000-25546119)
chr7 (42-174)||(1719030-1719161)
chr7 (14-110)||(42992902-42992998)
chr7 (24-124)||(43449125-43449225)
[»] scaffold0457 (1 HSPs)
scaffold0457 (49-141)||(2235-2327)


Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 7992576 - 7992322
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  7992576 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatccgtgttatgtaataataaatattatatatgtt 7992477  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaannnnnnnnnataaacaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||    
T  7992476 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa-ttttttttataaacaat 7992378  T
Q  213 cacataattattaataatgctgtattattttatggaaaaattataaattacattat 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7992377 cacataattattaataatgctgtattattttatggaaaaattataaattacattat 7992322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 176
Target Start/End: Complemental strand, 8007599 - 8007436
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||| |||||  | |||||||| |||||||||||||||||||    
T  8007599 aatatatctttcaaagaatacacatttttctcatttttcatgtattaaataagtatctttgagtcatccatattatgtgagaataaatattatatatgtt 8007500  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttct 176  Q
    ||||||| || |||||||| || |||||| |||||||||||||||| ||||  |||||||||||    
T  8007499 agaagtagaacgacattctcaattttaacccttattacatttatgtattatacttctattttct 8007436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 8035362 - 8035180
Alignment:
Q  13 aatatatctttcaaagaatacacatttttc-tcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgt 111  Q
    ||||||||||  |||||||||| ||||||| | ||| |||||||| |||||||| || |||||  |||   |||||||||| ||||||||||||||||||    
T  8035362 aatatatcttctaaagaatacaaatttttcctaattcttcatgtactaaataagtctttttgagccatgcatgttatgtgagaataaatattatatatgt 8035263  T
Q  112 tagaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
    |||||||||||||| | ||| || |||||| ||||||||| |||||| |||||||||||||||||| | ||||||| ||||||    
T  8035262 tagaagtacaaagatagtctcaattttaacccttattacacttatgtattatgtttctattttctgtctaataactgaattaa 8035180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 8044476 - 8044292
Alignment:
Q  15 tatatctttcaaagaatacacatttttctcattattcatgtattaaataaga---ctctttgaatcatctgtgttatgtgataataaatattatatat-- 109  Q
    |||||||| |||||||||||||||||||| ||  |||||||||||||||||    ||||||||  ||| | | |||||||| ||||||||||||||||      
T  8044476 tatatcttccaaagaatacacatttttctaatacttcatgtattaaataaggtctctctttgagacatgtattttatgtgagaataaatattatatatat 8044377  T
Q  110 gttagaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
    |||| ||||||||||| | ||| || |||||  |||||||||||||||| |||||||||||||||||| |  |||||| ||||||    
T  8044376 gttaaaagtacaaagatactctcaattttaatccttattacatttatgtattatgtttctattttctgtccgataactgaattaa 8044292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 39548046 - 39547887
Alignment:
Q  15 tatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttag 114  Q
    ||||| ||| ||||| ||||  ||||||||||| ||||||||| ||||||| |||| | |||||| | |||||||||||||||||||||||| ||| |||    
T  39548046 tatatattttaaagattacatgtttttctcattcttcatgtataaaataagcctctctaaatcatgtatgttatgtgataataaatattataaatgatag 39547947  T
Q  115 aagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctatttt 174  Q
     | ||| |||| ||||| | ||||||| |||||||||||| ||  |||||||| ||||||    
T  39547946 tattacgaagatattcttacatttaacccttattacatttgtgaattatgtttatatttt 39547887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 167
Target Start/End: Complemental strand, 2743308 - 2743153
Alignment:
Q  13 aatatatctttcaaagaa-tacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgt 111  Q
    ||||||||||||||| || |||| ||||| |||||| || || ||||||||||| || ||||||||||   |||  ||||| ||||||||||||||| |     
T  2743308 aatatatctttcaaaaaaatacatattttcctcattctttatttattaaataagtctatttgaatcatgaatgtcgtgtgagaataaatattatatacga 2743209  T
Q  112 tagaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgttt 167  Q
    ||||| ||||| || ||| | || |||||| ||||||| |||||||| ||||||||    
T  2743208 tagaaatacaatgaaattttcaactttaacccttattaaatttatgtattatgttt 2743153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 18265228 - 18265408
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    |||| |||||||||||||||||   |||||||||| || |  ||||||||||| ||||||||||||||| | | |||||| ||||| || ||||| ||||    
T  18265228 aatacatctttcaaagaatacatgattttctcattcttaaaatattaaataagtctctttgaatcatctatatcatgtgagaataagtactatatgtgtt 18265327  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
    | || |||||||| ||||| || ||||||    ||||||||| | | ||| |||||||||||||| | |||| || ||||||    
T  18265328 aaaaatacaaagatattctcaattttaaccaggattacatttgtatatta-gtttctattttctgtccaatagcttaattaa 18265408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 18274241 - 18274421
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    |||| |||||||||||||||||   |||||||||| || |  ||||||||||| ||||||||||||||| | | |||||| ||||| || ||||| ||||    
T  18274241 aatacatctttcaaagaatacatgattttctcattcttaaaatattaaataagtctctttgaatcatctatatcatgtgagaataagtactatatgtgtt 18274340  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
    | || |||||||| ||||| || ||||||    ||||||||| | | ||| |||||||||||||| | |||| || ||||||    
T  18274341 aaaaatacaaagatattctcaattttaaccaggattacatttgtatatta-gtttctattttctgtccaatagcttaattaa 18274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 125
Target Start/End: Complemental strand, 8021281 - 8021179
Alignment:
Q  23 tcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaa 122  Q
    |||||||||||||||||||||  || |||||||| ||| |||| |||||| |  |||   |||||||||| |||||||||||||||||| | | ||||||    
T  8021281 tcaaagaatacacatttttctagttcttcatgtactaactaagtctctttaagccatgcatgttatgtgagaataaatattatatatgtaataggtacaa 8021182  T
Q  123 aga 125  Q
    |||    
T  8021181 aga 8021179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 8050784 - 8050735
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaat 62  Q
    ||||||||| ||||||||||||||||||| | ||| ||||||||||||||    
T  8050784 aatatatctctcaaagaatacacatttttttaattcttcatgtattaaat 8050735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 163
Target Start/End: Original strand, 23038881 - 23038989
Alignment:
Q  55 tattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacattt 154  Q
    ||||||||| |||| ||||| ||||   |||||||||| ||| ||||||| ||||||||||| ||||| |  ||| |||| |||||| | |||||||| |    
T  23038881 tattaaatatgactatttgagtcatacatgttatgtgagaatgaatattacatatgttagaaatacaacgtgattgtaaattttaactcctattacatat 23038980  T
Q  155 atgttttat 163  Q
    |||| ||||    
T  23038981 atgtattat 23038989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 119
Target Start/End: Complemental strand, 12839012 - 12838942
Alignment:
Q  49 ttcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagta 119  Q
    ||||||||||||||| || ||||||| |||    ||| |||||| ||||||||||||||||| ||||||||    
T  12839012 ttcatgtattaaatatgagtctttgagtcacacatgtcatgtgagaataaatattatatatgatagaagta 12838942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 124
Target Start/End: Complemental strand, 1170839 - 1170802
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaag 124  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  1170839 atgtgaaaataaatattatatatgttagaaatacaaag 1170802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 113
Target Start/End: Original strand, 4516104 - 4516193
Alignment:
Q  24 caaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    |||||||||||||| |  |||||| |||| |||||||||| | |||||||||||||   |  ||||||| ||||||||  ||||||||||    
T  4516104 caaagaatacacatctccctcatttttcacgtattaaatatgtctctttgaatcatgaatcctatgtgagaataaataacatatatgtta 4516193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Complemental strand, 35370446 - 35370417
Alignment:
Q  83 tgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||||||||||||||||||||||    
T  35370446 tgttatgtgataataaatattatatatgtt 35370417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 24197808 - 24197988
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||| ||| |||||| ||||| |||||||||||||||||||||||| |||||| ||||||   |||  ||||| |||||||||| |||| |||    
T  24197808 aatatatcttttaaa-aatacatattttcctcattattcatgtattaaataagtctctttaaatcattcatgtcgtgtgagaataaatattgtataagtt 24197906  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
    | || || | ||| ||||| || |||||| ||||| |||||||||| |||||||||||||||||| |||||| || ||||||    
T  24197907 ataaataaatagagattctcaactttaactcttataacatttatgtattatgtttctattttctgtcaaatacctgaattaa 24197988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 12139793 - 12139971
Alignment:
Q  14 atatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    |||||||||| ||||| |||| ||||  |||||| ||||||||| ||||||| |||||||| || ||  | |||||||  ||||||||||||| |||| |    
T  12139793 atatatcttttaaagagtacatatttacctcattcttcatgtat-aaataagtctctttgagtcttcatt-ttatgtgtaaataaatattatacatgtga 12139890  T
Q  114 gaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataactcaattaa 194  Q
     || ||||||||  || | || |||||| ||||||| |||||||| ||| ||||||||||| || || |||||| ||||||    
T  12139891 aaaatacaaagaggttgttaattttaactcttattatatttatgtattacgtttctattttttgtcatataactaaattaa 12139971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 116
Target Start/End: Complemental strand, 49550276 - 49550173
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    |||||||||| ||||||||||||||||  ||  || ||||||| ||||| | |||| ||||||| || ||||| || ||| ||||||| ||||| |||||    
T  49550276 aatatatcttgcaaagaatacacatttcccttgtttttcatgtgttaaaaatgactatttgaataatgtgtgtcatatgagaataaatgttatacatgtt 49550177  T
Q  113 agaa 116  Q
    ||||    
T  49550176 agaa 49550173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 163
Target Start/End: Original strand, 17633467 - 17633547
Alignment:
Q  83 tgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacatttatgttttat 163  Q
    |||||||||| |||  ||||||||||||||| || |||||| | ||||| || ||||||  ||||||||||||||| ||||    
T  17633467 tgttatgtgagaatgcatattatatatgttataaatacaaaaagattctcaattttaactattattacatttatgtattat 17633547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 630290 - 630234
Alignment:
Q  53 tgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatat 109  Q
    ||||||||| | |||||||||||||||   ||| |||||| ||||||||||||||||    
T  630290 tgtattaaaaatgactctttgaatcattcatgtcatgtgagaataaatattatatat 630234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 171
Target Start/End: Complemental strand, 28462925 - 28462796
Alignment:
Q  41 tctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaa 140  Q
    ||||||| |||| |||||||||||||||||||  |||||   ||| |||||| ||||||| ||||||||||||||| |||||| | ||||| |  |||||    
T  28462925 tctcatttttca-gtattaaataagactctttagatcatgcatgtcatgtgaaaataaatgttatatatgttagaaatacaaatagattctcagttttaa 28462827  T
Q  141 cgcttattacatttatgttttatgtttctat 171  Q
    | |||||||||||||||| ||||||||||||    
T  28462826 ctcttattacatttatgtattatgtttctat 28462796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 153
Target Start/End: Original strand, 23936629 - 23936695
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacatt 153  Q
    |||||| ||||||||||||||||||||||| ||||||| |||  |||| |||| | | |||||||||    
T  23936629 atgtgagaataaatattatatatgttagaaatacaaagtcatcgtaaattttagcccctattacatt 23936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 35677313 - 35677363
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaata 63  Q
    |||||||||| |||||||||||| ||| ||||||| ||||| |||||||||    
T  35677313 aatatatcttgcaaagaatacacgtttctctcattcttcatttattaaata 35677363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 38016239 - 38016097
Alignment:
Q  15 tatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttag 114  Q
    ||||||||||||| |||| | ||| || ||||| |||||||||| |||||| | ||||||||||| | ||| |||||| |||||||| ||||||||||||    
T  38016239 tatatctttcaaaaaatatatattcttttcattcttcatgtattcaataagtccctttgaatcatgtttgtaatgtgagaataaataatatatatgttag 38016140  T
Q  115 aagtacaaagacattctaaaatttaacgcttattacatttatg 157  Q
    || |||||| | || ||||  || ||  |||||||||||||||    
T  38016139 aaatacaaatagatcctaactttaaatccttattacatttatg 38016097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 33202414 - 33202258
Alignment:
Q  18 atctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaag 117  Q
    |||||||||| |||||| ||||| ||||||  ||||||||| ||||||  |||||   ||||   ||| |||||| |||||||  ||||||||||||||     
T  33202414 atctttcaaataatacatattttcctcattcatcatgtattcaataagtttctttcggtcatgcatgtcatgtgagaataaat--tatatatgttagaaa 33202317  T
Q  118 tacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttct 176  Q
    || ||||| ||||| || |||||| |||||||  ||||||| |||||||||||| ||||    
T  33202316 tataaagagattctcaattttaacccttattatgtttatgtattatgtttctatcttct 33202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 3048294 - 3048330
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaa 123  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  3048294 atgtgagaataaatattatatatgttagaattacaaa 3048330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 33202212 - 33202152
Alignment:
Q  205 taaacaatcacataattattaataatgctgtattattttatggaaaaattataaattacat 265  Q
    |||| ||||||||||   ||||||| | | ||||||||||||||| |||||||||||||||    
T  33202212 taaataatcacataagatttaataaggttatattattttatggaagaattataaattacat 33202152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 20002222 - 20002365
Alignment:
Q  14 atatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    ||||||| |||||| |||||| |||||| ||||| |||||||||| |||||| || ||||| |||| | ||| |||||| |||||||| |||||||||||    
T  20002222 atatatcattcaaaaaatacatatttttttcattcttcatgtattcaataagtctatttgagtcatgtttgtaatgtgagaataaataatatatatgtta 20002321  T
Q  114 gaagtacaaagacattctaaaatttaacgcttattacatttatg 157  Q
    |||  |||||   ||| |||  || ||| |||||||||||||||    
T  20002322 gaaagacaaatggattataactttaaacccttattacatttatg 20002365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 158
Target Start/End: Original strand, 32933342 - 32933486
Alignment:
Q  14 atatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    |||||| || |||| |||||||||||   ||||| ||||| ||||||||| || | ||| | ||||   | | |||||| ||||||||||||||||||||    
T  32933342 atatattttgcaaataatacacatttccttcatttttcatatattaaatatgagtttttaagtcatgcatatcatgtgaaaataaatattatatatgtta 32933441  T
Q  114 gaagtacaaagacattctaaaatttaacgcttattacatttatgt 158  Q
    ||| |||||||  ||| |||| |||||||| ||||||||||||||    
T  32933442 gaaatacaaagtaattataaattttaacgcatattacatttatgt 32933486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 49757818 - 49757883
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacat 152  Q
    |||||| ||||||||||||||||||||||| || ||||| |||||||| |||||| ||||||||||    
T  49757818 atgtgagaataaatattatatatgttagaaatataaagagattctaaactttaacacttattacat 49757883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 158
Target Start/End: Complemental strand, 34804778 - 34804634
Alignment:
Q  14 atatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    |||||||||  ||| |||||| ||||| |||| | ||||||||||||||||| ||| || | ||||   ||| |||||| || |||||||||||||||||    
T  34804778 atatatcttgtaaataatacatattttcctcacttttcatgtattaaataagtctccttcagtcatgcatgtcatgtgagaaaaaatattatatatgtta 34804679  T
Q  114 gaagtacaaagacattctaaaatttaacgcttattacatttatgt 158  Q
    ||| || ||||  ||  |||| ||||||  || ||||||||||||    
T  34804678 gaaatataaagtgatcgtaaattttaaccgttgttacatttatgt 34804634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 155
Target Start/End: Original strand, 3942241 - 3942309
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacattta 155  Q
    |||||| ||||||||||||||||||||||| || ||||| ||||  || |||||  |||||||||||||    
T  3942241 atgtgagaataaatattatatatgttagaaatagaaagagattcccaattttaaatcttattacattta 3942309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 124
Target Start/End: Original strand, 23884316 - 23884403
Alignment:
Q  37 tttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaag 124  Q
    |||| |||||| |||||||||||||||  ||||| | ||||||   ||| || | | ||||||||||||||||||||||| |||||||    
T  23884316 ttttcctcattcttcatgtattaaatataactctataaatcatgcatgtcatataagaataaatattatatatgttagaaatacaaag 23884403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 29126213 - 29126310
Alignment:
Q  24 caaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtaca 121  Q
    |||||||||||||| | || ||||  |||||||||||||| || |||| || ||||   |||||| ||  ||| ||||||||||||||||||| ||||    
T  29126213 caaagaatacacatctctcacattcctcatgtattaaatatgaatcttagagtcatgcatgttatttggaaatgaatattatatatgttagaaataca 29126310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 4919051 - 4919219
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||| ||||||| || ||||| |||||| |  ||||| ||||||||  | ||||||||||    || |||||| ||||||||||||  || ||    
T  4919051 aatatatcttttaaagaatgcatattttcctcattttgtatgtagtaaataagttt-tttgaatcat----gtcatgtgagaataaatattattgat-tt 4919144  T
Q  113 agaagtacaaagacattctaaaatttaacgcttattacatttatgttttatgtttctattttctgccaaataact 187  Q
    |||| |||||||| ||||| || |||||| |||||||||||||||| || || ||||||||| || |||||||||    
T  4919145 agaaatacaaagagattctcaactttaacccttattacatttatgtattgtgcttctattttttgtcaaataact 4919219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 2697674 - 2697738
Alignment:
Q  45 attattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatat 109  Q
    ||||| ||| ||||||||| |||||||||| |||| |  ||||  ||||||||||||||||||||    
T  2697674 attatgcatatattaaatatgactctttgagtcatttaagttacatgataataaatattatatat 2697738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 8714233 - 8714341
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||| ||| |||||| |||||||||||| || |||||||||||| |  | ||||||||||    || |||||| |||||||||||||||||||    
T  8714233 aatatatctttgaaacaatacatatttttctcattctttatgtattaaatatgtatatttgaatcatgcaagtcatgtgagaataaatattatatatgtt 8714332  T
Q  113 agaagtaca 121  Q
    |||| ||||    
T  8714333 agaaataca 8714341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 156
Target Start/End: Original strand, 42874128 - 42874199
Alignment:
Q  85 ttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttattacatttat 156  Q
    |||||||| ||||||||||||||| ||||||| |||||||  ||| |||| |||||| ||| ||||||||||    
T  42874128 ttatgtgagaataaatattatataggttagaaatacaaagtgattgtaaattttaacccttgttacatttat 42874199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 2685580 - 2685475
Alignment:
Q  49 ttcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaacgcttatt 148  Q
    |||||||||| ||||   |||||||||||||    || |||||| |||||||||||||||| |||||| |||||||  ||  |||| |||||| | ||||    
T  2685580 ttcatgtattgaatatagctctttgaatcat----gtcatgtgagaataaatattatatattttagaaatacaaagtaatcgtaaattttaactcgtatt 2685485  T
Q  149 acatttatgt 158  Q
    ||||||||||    
T  2685484 acatttatgt 2685475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 23404764 - 23404701
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaat 76  Q
    ||||||| || ||||||||||| || ||||| ||| ||||||||||||||| ||| ||||||||    
T  23404764 aatatatattacaaagaatacatatctttcttattcttcatgtattaaatatgacactttgaat 23404701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 3001055 - 3001091
Alignment:
Q  87 atgtgataataaatattatatatgttagaagtacaaa 123  Q
    |||||||||| ||||||||||||||||||| ||||||    
T  3001055 atgtgataatgaatattatatatgttagaaatacaaa 3001091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 131
Target Start/End: Original strand, 19736388 - 19736505
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    |||||||||||||||  ||| ||  || | ||||||||||| ||||||||||| || ||||| ||||   ||| |||||| |||||||||||||||||||    
T  19736388 aatatatctttcaaaatatatactattgtatcattattcat-tattaaataagtctatttgagtcatacatgtcatgtgagaataaatattatatatgtt 19736486  T
Q  113 agaagtacaaagacattct 131  Q
    |||| |||||||| |||||    
T  19736487 agaaatacaaagaaattct 19736505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 35217637 - 35217553
Alignment:
Q  29 aatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtta 113  Q
    ||||||||| |  |||||| |||||  |||||||| |||||||||||| ||   ||||| |||||||||||||||||||||||||    
T  35217637 aatacacatatcactcattcttcatacattaaatatgactctttgaataatgcatgttacgtgataataaatattatatatgtta 35217553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 18891875 - 18891764
Alignment:
Q  13 aatatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgtt 112  Q
    ||||||||||||||||| ||  ||| | | ||||| ||||||||||||||| |||||||||| ||||   ||  |||||| ||| |||||||||||| ||    
T  18891875 aatatatctttcaaagagtatgcatctgtatcattgttcatgtattaaatatgactctttgagtcatacatgcaatgtgagaatgaatattatatatatt 18891776  T
Q  113 agaagtacaaag 124  Q
    | || |||||||    
T  18891775 acaaatacaaag 18891764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 158
Target Start/End: Complemental strand, 25546119 - 25546000
Alignment:
Q  39 tttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaattt 138  Q
    ||||||||| |||||||| |||||||| || ||||  |||| | ||| |||||| |||||||||||||||||||| || ||| ||   ||| | || |||    
T  25546119 tttctcatttttcatgtaataaataagtctatttgtgtcatgtatgtcatgtgagaataaatattatatatgttacaaatactaaacaattattaatttt 25546020  T
Q  139 aacgcttattacatttatgt 158  Q
    |||  |||||||||||||||    
T  25546019 aacttttattacatttatgt 25546000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 1719030 - 1719161
Alignment:
Q  42 ctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaac 141  Q
    |||||| ||| ||||||||||| |||| ||||||| || ||||| |||||| |||| |||| ||||| ||||||| ||||| |   || |||||||||||    
T  1719030 ctcatttttcgtgtattaaataggact-tttgaattatgtgtgtcatgtgagaatatatataatataagttagaaatacaacgtggttgtaaaatttaac 1719128  T
Q  142 gcttattacatttatgttttatgtttctatttt 174  Q
     | | ||| ||||| || |||||| ||||||||    
T  1719129 ccctcttatatttaagtattatgtatctatttt 1719161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 110
Target Start/End: Original strand, 42992902 - 42992998
Alignment:
Q  14 atatatctttcaaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatg 110  Q
    |||||||||  ||| |||||| ||||||  |||| ||| |||||||||||  ||||||||| ||||   ||| | |||| |||||||||||||||||    
T  42992902 atatatcttgtaaaaaatacatattttttccattcttcgtgtattaaatataactctttgagtcatgcatgtcacgtgagaataaatattatatatg 42992998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 43449225 - 43449125
Alignment:
Q  24 caaagaatacacatttttctcattattcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaa 123  Q
    ||||| ||||| || ||||| ||| ||||| ||||||||| |||| |||  |||||   | | ||| |||| ||||||||||||||||||||| ||||||    
T  43449225 caaaggatacatatatttcttatttttcatatattaaatatgacttttttgatcatgcatatcatgagatattaaatattatatatgttagaaatacaaa 43449126  T
Q  124 g 124  Q
    |    
T  43449125 g 43449125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 2327 - 2235
Alignment:
Q  49 ttcatgtattaaataagactctttgaatcatctgtgttatgtgataataaatattatatatgttagaagtacaaagacattctaaaatttaac 141  Q
    ||||| |||||| || ||||||||||  |||   ||| |||||| |||||||||||||||||||| || |||||||   || |||||||||||    
T  2327 ttcatatattaactatgactctttgagccatgcatgtaatgtgagaataaatattatatatgttaaaaatacaaagtggttgtaaaatttaac 2235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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