View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_48 (Length: 266)

Name: NF0814_low_48
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_48
NF0814_low_48
[»] chr8 (8 HSPs)
chr8 (30-266)||(7992045-7992284)
chr8 (42-129)||(8007010-8007095)
chr8 (106-197)||(18265549-18265642)
chr8 (106-197)||(18274562-18274655)
chr8 (29-212)||(8020736-8020922)
chr8 (149-212)||(8044076-8044137)
chr8 (233-266)||(8007257-8007290)
chr8 (233-265)||(39547687-39547719)
[»] chr2 (2 HSPs)
chr2 (75-204)||(33201911-33202042)
chr2 (155-201)||(38011050-38011096)
[»] chr4 (1 HSPs)
chr4 (232-265)||(8714519-8714552)
[»] chr5 (1 HSPs)
chr5 (233-265)||(27022322-27022354)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 30 - 266
Target Start/End: Original strand, 7992045 - 7992284
Alignment:
Q  30 tttgagacgcaaaagaccaccaatttttgtttaatatagcatacatatagtataaatgttcatatgtgcaatattgtttttaatattatatgtcaaataa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7992045 tttgagacgcaaaagaccaccaatttttgtttaatatagcatacatatagtataaatgttcatatgtgcaatattgtttttaatattatatgtcaaataa 7992144  T
Q  130 attgaggttaacaattgtgtgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaaaagaagaacataaataaatgaatatnnnnnnnn 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||            
T  7992145 attgaggttaacaattgtgtgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaacagaagaaaataaataaatgaatataaaaaaaa 7992244  T
Q  230 nn---gatgaaaacaaatgagagaacaaataaataattat 266  Q
         |||||||||||||||||||||||||||||| ||||    
T  7992245 aaaaagatgaaaacaaatgagagaacaaataaatagttat 7992284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 129
Target Start/End: Original strand, 8007010 - 8007095
Alignment:
Q  42 aagaccaccaatttttgtttaatatagcatacatatagtataaatgttcatatgtgcaatattgtttttaatattatatgtcaaataa 129  Q
    |||||||| |||||||||||||||  ||||||||||||||||||| || | ||||||| |||  ||||| ||||||||||||||||||    
T  8007010 aagaccactaatttttgtttaataatgcatacatatagtataaatatttagatgtgcactat--ttttttatattatatgtcaaataa 8007095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 18265642 - 18265549
Alignment:
Q  106 tttttaatattatatgtcaaataaattgaggttaacaattgt--gtgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaaa 197  Q
    |||||||||||||||||| || || | |||  |||||||| |  ||||||||| |||||| ||| | | |||||||||||||||||||||||||    
T  18265642 tttttaatattatatgtcgaacaattagagtgtaacaattttttgtgctcgtgcgttcgcaaaaatatattttattttatgcatttgtggaaaa 18265549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 197
Target Start/End: Complemental strand, 18274655 - 18274562
Alignment:
Q  106 tttttaatattatatgtcaaataaattgaggttaacaattgt--gtgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaaa 197  Q
    |||||||||||||||||| || || | |||  |||||||| |  ||||||||| |||||| ||| | | |||||||||||||||||||||||||    
T  18274655 tttttaatattatatgtcgaacaattagagtgtaacaattttttgtgctcgtgcgttcgcaaaaatatattttattttatgcatttgtggaaaa 18274562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 212
Target Start/End: Original strand, 8020736 - 8020922
Alignment:
Q  29 atttgagacgcaaaagaccaccaatttttgtttaatatagcatacata--tagtataaatgttcatatgtgcaatatt-gtttttaatattatatgtcaa 125  Q
    ||||||||| ||||||| || ||||||||| ||||||    |||||||  || ||||||| || | | |||||||| | |||||||||||||||||| ||    
T  8020736 atttgagacacaaaagaacatcaatttttgcttaata----atacatagataatataaatatttagacgtgcaataatagtttttaatattatatgtaaa 8020831  T
Q  126 ataaattgaggtta--acaattg--tgtgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaaaagaagaacataaata 212  Q
    |||| | |||| ||  ||||||   | | |||||||||| || |||  ||||||||||||| ||||||||| ||||| ||||| |||||||    
T  8020832 ataattagagggtataacaatttcttatactcgtgtgtttgcaaaagcgtcttttattttacgcatttgtgaaaaaacaagaaaataaata 8020922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Original strand, 8044076 - 8044137
Alignment:
Q  149 tgctcgtgtgttcgctaaattgtcttttattttatgcatttgtggaaaaagaagaacataaata 212  Q
    |||||||||||||||  || |||||||| ||||| | ||||||||||||||||||| |||||||    
T  8044076 tgctcgtgtgttcgc--aagtgtcttttgttttacgtatttgtggaaaaagaagaaaataaata 8044137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 8007257 - 8007290
Alignment:
Q  233 atgaaaacaaatgagagaacaaataaataattat 266  Q
    |||||||||||||||| |||||||||||||||||    
T  8007257 atgaaaacaaatgagaaaacaaataaataattat 8007290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 39547687 - 39547719
Alignment:
Q  233 atgaaaacaaatgagagaacaaataaataatta 265  Q
    ||||||||||||||||||| |||||||||||||    
T  39547687 atgaaaacaaatgagagaaaaaataaataatta 39547719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 204
Target Start/End: Original strand, 33201911 - 33202042
Alignment:
Q  75 tatagtataaatgttcatatgtgcaatattgtttttaatattatatgtcaaataaattgaggttaacaattgtgtg--ctcgtgtgttcgctaaattgtc 172  Q
    |||||||||||| || | ||||||| || |  ||||||||||||||||||||||| | |||| |||||||| | |   || ||||||| || ||| |||     
T  33201911 tatagtataaatatttagatgtgcactaattattttaatattatatgtcaaataattagagggtaacaattttttatacttgtgtgtttgcaaaagtgtt 33202010  T
Q  173 ttttattttatgcatttgtggaaaaagaagaa 204  Q
    |||||||||| ||||||||||||||| |||||    
T  33202011 ttttattttacgcatttgtggaaaaataagaa 33202042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Original strand, 38011050 - 38011096
Alignment:
Q  155 tgtgttcgctaaattgtcttttattttatgcatttgtggaaaaagaa 201  Q
    ||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  38011050 tgtgttcacaaaagtgtcttttattttacgcatttgtggaaaaagaa 38011096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 8714552 - 8714519
Alignment:
Q  232 gatgaaaacaaatgagagaacaaataaataatta 265  Q
    ||||||||||||||||||||||||||||||||||    
T  8714552 gatgaaaacaaatgagagaacaaataaataatta 8714519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 27022322 - 27022354
Alignment:
Q  233 atgaaaacaaatgagagaacaaataaataatta 265  Q
    |||||||||||||||||||||||||||||||||    
T  27022322 atgaaaacaaatgagagaacaaataaataatta 27022354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University