View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_49 (Length: 265)
Name: NF0814_low_49
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 3794619 - 3794390
Alignment:
| Q |
1 |
ttgaagtgcaaacaaatctcaaattattgacattcctattatattagttctcaatactctactataacatgattaccaaccacctcaaagtattattaaa |
100 |
Q |
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| T |
3794619 |
ttgaagtgcaaacaaatctcaaattattgacattcctattatattagtgctcaatactctactataacatgattaccaaccacctcaaagtattattaaa |
3794520 |
T |
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| Q |
101 |
aatagaaaaagttattagaacaacaattagtaacaaaaggttagagaaaatgcaaattgcaaacaatgaaacacgatcgtttgtttatattattcgacca |
200 |
Q |
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| T |
3794519 |
aatagaaaaagttattagaacaacaattagtaa-aaaaggttagagaaaatgcaaattgcaaacaatgaaactcgatcgtttgtttatgttattcgacca |
3794421 |
T |
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| Q |
201 |
attgtgtctacctctctatgactacaaagca |
231 |
Q |
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| T |
3794420 |
attgtgtctacctctctatgactacagagca |
3794390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 52579771 - 52579698
Alignment:
| Q |
115 |
ttagaacaacaattagtaacaaaaggttagagaaaatgcaaattgcaa-acaatgaaacacgatcgtttgttta |
187 |
Q |
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| T |
52579771 |
ttagaacagcaactagtaacagaagattaaagaaaatgaaaatcgcaagacaatgaaacacgatcgtttgttta |
52579698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 38970255 - 38970183
Alignment:
| Q |
115 |
ttagaacaacaattagtaacaaaaggttagagaaaatgcaaattgcaaacaatgaaacacgatcgtttgttta |
187 |
Q |
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| T |
38970255 |
ttagaacatcaactagtaacagaagatcaaagaaaacgcaaatcgcaaacaacggaacacaatcgtttgttta |
38970183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 5948703 - 5948804
Alignment:
| Q |
112 |
ttattagaacaacaattagtaacaaaaggttagagaaaatgcaaattgcaaacaatgaaacacgatcgtttgtttatattattcgaccaattgtgtctac |
211 |
Q |
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| T |
5948703 |
ttattagaacaacaattagtaactaattattaaagaaaacttaaatcggaaacaattgaacatgatcgtttgtttatgtagttcgaccaattgtgcctac |
5948802 |
T |
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| Q |
212 |
ct |
213 |
Q |
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|| |
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|
| T |
5948803 |
ct |
5948804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 38833496 - 38833566
Alignment:
| Q |
115 |
ttagaacaacaattagtaacaaaaggttagagaaaatgcaaattgcaaacaatgaaacacgatcgtttgtt |
185 |
Q |
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| T |
38833496 |
ttagaacttcaactagtaacaaaagattaaagaaaacacaaattgcaaacaatggaacatgattgtttgtt |
38833566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 46159957 - 46159892
Alignment:
| Q |
122 |
aacaattagtaacaaaaggttagagaaaatgcaaattgcaaacaatgaaacacgatcgtttgttta |
187 |
Q |
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||||| |||||||||| | ||| |||||| |||||||| ||| |||| | |||||||||||||||| |
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| T |
46159957 |
aacaactagtaacaaatgattaaagaaaacgcaaattgaaaataatggagcacgatcgtttgttta |
46159892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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