View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_55 (Length: 254)
Name: NF0814_low_55
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_55 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 4021188 - 4021032
Alignment:
| Q |
88 |
tctttgattcgctatatcgtttttggaggtaaagcttctttctatctaccacgacttcccaaaacaagttttccatttcaagctttggtatactctgcgc |
187 |
Q |
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| T |
4021188 |
tctttgattcgctatatcgtttttggaggtaaagcttctttctatctaccacgacttcccaaaacaaattttccatttcaagctttggtatactctgcgc |
4021089 |
T |
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| Q |
188 |
aggaagtgttctcatgtgacaacaatataacaattgtgtgctaattgagtattatct |
244 |
Q |
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| T |
4021088 |
aggaagtgttctcatgtgacaacaatataacaattgtgtgctaattgggtattatct |
4021032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 4021276 - 4021230
Alignment:
| Q |
34 |
tttttgcgctcaattatggaaaccctaatgactctaacaaccaccag |
80 |
Q |
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| T |
4021276 |
tttttgcgctcaattatggaaaccctaatgactctaacaaccaccag |
4021230 |
T |
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