View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0814_low_56 (Length: 253)
Name: NF0814_low_56
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0814_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 23839570 - 23839673
Alignment:
| Q |
32 |
atgtagcatttgtaagagaaaataatgttataaataaatcattcctattaagattgtaagctagacacaaaatttgtttgagttttatgtatgatagctt |
131 |
Q |
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| T |
23839570 |
atgtaccatttgtaagagaaaaaaatgttataaataaatcattcctattaagattgtaagtcaggcacaaaatttgtttgagttttatgtgtgattgttt |
23839669 |
T |
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| Q |
132 |
ttaa |
135 |
Q |
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|||| |
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| T |
23839670 |
ttaa |
23839673 |
T |
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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 14989297 - 14989345
Alignment:
| Q |
32 |
atgtagcatttgtaagagaaaataatgttataaataaatcattcctatt |
80 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
14989297 |
atgtagcatttgtaagagaaaaaaatgttataaataaatcattcatatt |
14989345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 14989360 - 14989403
Alignment:
| Q |
170 |
gttgcaactaatgagtttttgaaaaggacttgcaatcgttgagt |
213 |
Q |
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| T |
14989360 |
gttgcaactaatgagtttttgaaaaggacttgcaattgttgagt |
14989403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 82
Target Start/End: Complemental strand, 6611013 - 6610962
Alignment:
| Q |
32 |
atgtagcatttgtaagagaaaataa-tgttataaataaatcattcctattaa |
82 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
6611013 |
atgtagcatttgtaagagaaaaaaaatgttataaataaatcattcctattaa |
6610962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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