View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0814_low_61 (Length: 246)

Name: NF0814_low_61
Description: NF0814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0814_low_61
NF0814_low_61
[»] chr1 (7 HSPs)
chr1 (1-235)||(47574446-47574680)
chr1 (1-235)||(47584147-47584380)
chr1 (1-119)||(47627160-47627278)
chr1 (1-98)||(47593026-47593123)
chr1 (37-112)||(47287562-47287637)
chr1 (16-111)||(47568252-47568346)
chr1 (1-89)||(47636509-47636597)
[»] chr6 (5 HSPs)
chr6 (1-95)||(22206807-22206901)
chr6 (11-98)||(22086171-22086258)
chr6 (1-111)||(21968277-21968387)
chr6 (33-94)||(18991091-18991152)
chr6 (33-101)||(18979739-18979807)
[»] scaffold0074 (1 HSPs)
scaffold0074 (33-95)||(49583-49645)
[»] chr5 (2 HSPs)
chr5 (1-59)||(454561-454619)
chr5 (1-59)||(470086-470144)


Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 47574680 - 47574446
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccac 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47574680 atttttggattcatattaccatctaacaggacatcgctaggtttcagatcacgatgtatgattttgaggcgagaatcttcatggagataaagaattccac 47574581  T
Q  101 gggcaactcctttgatgattttctgacgttgagaccaagataatagttttcgcttctggggatctacaatattagtttatttggaaggttgattatccag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47574580 gggcaactcctttgatgattttctgacgttgagaccaagataatagttttcgcttctgggggtctacaatattagtttatttggaaggttgattatccag 47574481  T
Q  201 ttcgaatcataatggatccataaaaggtcattcat 235  Q
    |||||||||||||||||||||||||||||||||||    
T  47574480 ttcgaatcataatggatccataaaaggtcattcat 47574446  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 47584380 - 47584147
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccac 100  Q
    |||||||| ||||| |||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47584380 atttttgggttcatgttactatctaataagacattgctaggtttaagatcacgatgtattattttgaggcgagaatcttcatggaggtaaagaattccac 47584281  T
Q  101 gggcaactcctttgatgattttctgacgttgagaccaagataatagttttcgcttctggggatctacaatattagtttatttggaaggttgattatccag 200  Q
    |||||| |||||||||||| ||||| ||||||||||||| ||| || |||||||| |||||||||||||| ||||||| |||||| |||  ||| || ||    
T  47584280 gggcaattcctttgatgatcttctggcgttgagaccaaggtaaaagctttcgcttatggggatctacaatgttagtttctttggatggtcaatt-tcgag 47584182  T
Q  201 ttcgaatcataatggatccataaaaggtcattcat 235  Q
    ||| ||| | || ||||||| ||||||| ||||||    
T  47584181 ttcaaataagaacggatccacaaaaggtaattcat 47584147  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 47627278 - 47627160
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccac 100  Q
    |||||||||||||||||   |||||  || |||||||| ||||| | |||||| ||||| || ||||| |||||||||||||| || ||||||||||| |    
T  47627278 atttttggattcatattgttatctagaagaacattgcttggtttaatatcacggtgtataatcttgagacgagaatcttcatgaaggtaaagaattcctc 47627179  T
Q  101 gggcaactcctttgatgat 119  Q
    | ||||  ||||| |||||    
T  47627178 gagcaatccctttaatgat 47627160  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 47593123 - 47593026
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattcc 98  Q
    ||||| |||||||||||  |||| |  || ||||| |||||||| ||||| |||||||| | |||||| ||||||| |||||| | ||||||||||||    
T  47593123 attttaggattcatattttcatccagtagaacattactaggtttgagatcccgatgtataactttgagacgagaatattcatgcaaataaagaattcc 47593026  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 112
Target Start/End: Complemental strand, 47287637 - 47287562
Alignment:
Q  37 ctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaactcctt 112  Q
    |||| ||| ||||| |||||||| ||| | || ||||||||||| || |||||||| ||||||||||||| |||||    
T  47287637 ctagctttaagatcgcgatgtatgattctaagtcgagaatcttcgtgaagataaagcattccacgggcaattcctt 47287562  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 47568346 - 47568252
Alignment:
Q  16 ttaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacgggcaactcct 111  Q
    |||||||||||||  ||||| ||| |||| |||||||  ||| | ||||| ||||| ||||| |||||||||||||||||||| || |||| ||||    
T  47568346 ttaccatctaacaaaacattactatgttttagatcactgtgt-taattttaaggcgtgaatcctcatggagataaagaattcctcgagcaattcct 47568252  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 47636597 - 47636509
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagata 89  Q
    ||||||||||||||||  ||||| ||||  |  ||||||| ||| ||||||||||| || ||||| || | |||||||||||| |||||    
T  47636597 atttttggattcatatctccatccaacaatatgttgctagctttaagatcacgatgaataattttaagcctagaatcttcatgaagata 47636509  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 22206901 - 22206807
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaat 95  Q
    ||||| ||| |||||||  ||||||| || | |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | |||||||||    
T  22206901 attttaggaatcatattttcatctaatagaatattgctaggtttgagatcccgatgtataactttgagtcgagaattttcatgcaaataaagaat 22206807  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 98
Target Start/End: Original strand, 22086171 - 22086258
Alignment:
Q  11 tcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattcc 98  Q
    |||||||  ||||||| || | ||| || ||||| |||||||||||||| | |||||| ||||||| |||||| | ||||||||||||    
T  22086171 tcatattttcatctaatagaatattacttggtttgagatcacgatgtataactttgagtcgagaatgttcatgcaaataaagaattcc 22086258  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 21968277 - 21968387
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccac 100  Q
    ||||| ||| |||||||  ||||||| || | ||| |||||||| ||||| |||||||| | |||||| |||||||  ||||| | |||||||||||| |    
T  21968277 attttaggaatcatattttcatctaatagaatattactaggtttgagatcgcgatgtataactttgagtcgagaatgctcatgcaaataaagaattcctc 21968376  T
Q  101 gggcaactcct 111  Q
    | |||| ||||    
T  21968377 gagcaattcct 21968387  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 18991091 - 18991152
Alignment:
Q  33 attgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaa 94  Q
    |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | ||||||||    
T  18991091 attgctaggtttgagatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaa 18991152  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 101
Target Start/End: Original strand, 18979739 - 18979807
Alignment:
Q  33 attgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaattccacg 101  Q
    |||||||||||| | ||| |||||||| | |||||| ||||||| |||||| | |||||||| ||||||    
T  18979739 attgctaggtttgacatcccgatgtataactttgagtcgagaatgttcatgcaaataaagaagtccacg 18979807  T

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Target: scaffold0074 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 49645 - 49583
Alignment:
Q  33 attgctaggtttcagatcacgatgtattattttgaggcgagaatcttcatggagataaagaat 95  Q
    |||||||||||| ||||| |||||||| | |||||| ||||||| |||||| | |||||||||    
T  49645 attgctaggtttgagatcccgatgtataactttgagtcgagaatattcatgcaaataaagaat 49583  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 454561 - 454619
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtat 59  Q
    |||||||||||||||||   ||||||||  | |||||||||||| ||||||||||||||    
T  454561 atttttggattcatattcttatctaacaatatattgctaggtttgagatcacgatgtat 454619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 470086 - 470144
Alignment:
Q  1 atttttggattcatattaccatctaacaggacattgctaggtttcagatcacgatgtat 59  Q
    |||||||||||||| ||  |||||||||  |||||||||||||| ||||| ||||||||    
T  470086 atttttggattcattttgtcatctaacaatacattgctaggtttgagatctcgatgtat 470144  T

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