View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_high_17 (Length: 219)
Name: NF0815_high_17
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 38557968 - 38558120
Alignment:
| Q |
1 |
gttatctatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatac---tcatatatatttgtctatgaaaatgttatatt |
97 |
Q |
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| T |
38557968 |
gttatctatactatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatactcatcatatatatttgtctatgaaaatgttatatt |
38558067 |
T |
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| Q |
98 |
gttgttgtcattcnnnnnnnnnnnnngaacttatatcatgtttctcattctaa |
150 |
Q |
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| T |
38558068 |
gttattgtcattcaaaaaaagaaaaagaacttatatcatgtttctcattctaa |
38558120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 42065903 - 42065854
Alignment:
| Q |
3 |
tatctatattatgtataaagaaaatatatggttttgaggtgattttttca |
52 |
Q |
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| T |
42065903 |
tatctatactatatataaagaaaatatatgattttgagctgactttttca |
42065854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 44440344 - 44440384
Alignment:
| Q |
16 |
tataaagaaaatatatggttttgaggtgattttttcacttc |
56 |
Q |
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| T |
44440344 |
tataaagaaaatatatggttttgagctgattttttcacttc |
44440384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 35695190 - 35695250
Alignment:
| Q |
5 |
tctatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatac |
65 |
Q |
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| T |
35695190 |
tctatactatatataaaggaaatatatggttttgggctggctttttcacttccaattatac |
35695250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 36476625 - 36476718
Alignment:
| Q |
4 |
atctatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatactcatatatatttgtctatgaaaatgttatatt |
97 |
Q |
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| T |
36476625 |
atctatactatgtacaacaaaaatgcatggttttaggatgattttttcactttcaattatactcttacaaaattgcctataaaaatgttatatt |
36476718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 39678025 - 39678087
Alignment:
| Q |
3 |
tatctatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatac |
65 |
Q |
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| T |
39678025 |
tatctatattatatataaagaaaacacatgattttgggctgatttttttacttctaattatac |
39678087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 21190478 - 21190385
Alignment:
| Q |
16 |
tataaagaaaatatatggttttgaggtgattttttcacttccaattata--ctcatatatatttgtctatgaaaatgttatattgttgttgtca |
107 |
Q |
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| T |
21190478 |
tataaagagaatagatggttttggggtagttttttcacttacaattatattcttaaataaatttgtctataagaatgttacattgttcttgtca |
21190385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 1292222 - 1292158
Alignment:
| Q |
3 |
tatctatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattatactc |
67 |
Q |
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|||||||| | | ||||||||||||||||| || | |||||||||||||||||||||||||| |
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| T |
1292222 |
tatctatactgtatataaagaaaatatatgattatagactgattttttcacttccaattatactc |
1292158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 2684691 - 2684635
Alignment:
| Q |
7 |
tatattatgtataaagaaaatatatggttttgaggtgattttttcacttccaattat |
63 |
Q |
| |
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|||| ||| |||||||| |||| |||||||||| |||||||||||||| ||||||| |
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| T |
2684691 |
tatactatatataaagataatacatggttttgaactgattttttcactttcaattat |
2684635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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