View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_high_2 (Length: 509)
Name: NF0815_high_2
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 241 - 501
Target Start/End: Original strand, 44298264 - 44298524
Alignment:
| Q |
241 |
aaaccttgtactaattagggtgtgaagttttcggttgattttttggaggtaaaataccaatccaattgaaaatagttggtttggttagtttttgtaattt |
340 |
Q |
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| T |
44298264 |
aaaccttgtactaattagggtgtgaagttttcggttgattttttggaggaaaaataccaatccaattgaaaatagttggtttggttagtttttgtaattt |
44298363 |
T |
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| Q |
341 |
annnnnnnataaattcaaatcaaatcgaaaggaataagttagtttgatttgattcaatggaattgatgtttttaaatttttatggaatctgtatcacata |
440 |
Q |
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| T |
44298364 |
atttttttataaattcaaatcaaatcgaaaagaataagttagtttgatttgattcaatggaattgatgtttttaaatttttatggaatccgtatcacaca |
44298463 |
T |
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| Q |
441 |
ggtatcaatacatgatacatattagatatcgatacgtcatccattttaaaatatctctgct |
501 |
Q |
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| T |
44298464 |
ggtatcaatacatgttacatattagataccgatacgtcatccattttaaaatatctatgct |
44298524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 44298077 - 44298181
Alignment:
| Q |
49 |
tgattctcattgtactcgtcaaatgtatatattttgtacatgagtgagggacataaaagatagtattagtatagggagtagtattttatataaaccaact |
148 |
Q |
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| T |
44298077 |
tgattctcattgtactcgtcaaatgtatatattttgtacatgagtgagggacataaaagatagtattagtat----agtagtattttatataaaccaact |
44298172 |
T |
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| Q |
149 |
tgtcaaatg |
157 |
Q |
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| T |
44298173 |
tgtcaaatg |
44298181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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