View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_low_1 (Length: 678)
Name: NF0815_low_1
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 137 - 440
Target Start/End: Original strand, 25380480 - 25380783
Alignment:
| Q |
137 |
atttaggttttggagggaaataagacaattaattccaaacatggatttaggaggaatgtgagaaaatgttggaggaatcaaagttctgaataaatatagt |
236 |
Q |
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| T |
25380480 |
atttaggttttggagggaaataagacaattaattccaaacgtggatttaggaggaatgtgagaaaatgttagaggaatcaaagttctgaataaatatagt |
25380579 |
T |
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| Q |
237 |
aaaatcaaaacattcatgtgaatgataaatttggaaagtgacaagattatgcccgcaagttcataagatatagaaagtaaataaagacaaattgatcgaa |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25380580 |
aaaatcaaaacattcatgtgaatgataaatttggaaagtgacaagattatgcccgcaagttcataagatatagaaagtaaataaagacaaattgatcgaa |
25380679 |
T |
|
| Q |
337 |
ctgagcagatgacaaaaatagatcttagaaaaatcacatctaaatcttgatcatgcaaaataattatcaaaatcatagataaattttcaaggctagctaa |
436 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25380680 |
ctgagcagatgacaaaaatagatcttagaaaaatcacatctaaatcttgatcatgcaaaataattatcaaaatcatagataaattttcaaggctagctaa |
25380779 |
T |
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| Q |
437 |
aaca |
440 |
Q |
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|||| |
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| T |
25380780 |
aaca |
25380783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 476 - 595
Target Start/End: Original strand, 25380783 - 25380902
Alignment:
| Q |
476 |
acacatacacattatggagagaaaatatatcgaaaaattgaaagattaaagaagtgacatactttgatatcaggcctcagatgattatgccatcgttctc |
575 |
Q |
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| T |
25380783 |
acacatacacattatggagagaaaatatatcgaaaaattgaaagattaaataagtgacatactttgatatcaggcctcagatgattatgccatcgttccc |
25380882 |
T |
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| Q |
576 |
tacactgctttccagctctt |
595 |
Q |
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| T |
25380883 |
tgcactgctttccagctctt |
25380902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 155 - 285
Target Start/End: Original strand, 25380210 - 25380339
Alignment:
| Q |
155 |
aataagacaattaattccaaacatggatttaggaggaatgtgagaaaatgttggaggaatcaaagttctgaataaatatagtaaaatcaaaacattcatg |
254 |
Q |
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|||| |||||||||| |||||| ||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
25380210 |
aatatgacaattaat-ccaaacttgggtttaggaagaatgtgagaaattgtgggaggaaacaaagttctgaataaatatagtaaaatcaaaacatgcatg |
25380308 |
T |
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| Q |
255 |
tgaatgataaatttggaaagtgacaagatta |
285 |
Q |
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| ||||||||| |||||||||||||| |||| |
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| T |
25380309 |
tcaatgataaacttggaaagtgacaacatta |
25380339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 25380407 - 25380481
Alignment:
| Q |
21 |
caaagatagatcctagaaaaaacaaattacatgctcaataattatcaagatataatgaaattttctaggctaaat |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25380407 |
caaagatagatcctagaaaaaacaaattacatgctcaataattatcaagatataatgaaattttctaggccaaat |
25380481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 25380136 - 25380181
Alignment:
| Q |
111 |
aaatggaggtaaaccttgtcaaggttatttaggttttggagggaaa |
156 |
Q |
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||||||||| |||||||||||||||||||| || ||||||||||| |
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| T |
25380136 |
aaatggagggaaaccttgtcaaggttatttgagtgttggagggaaa |
25380181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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