View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0815_low_10 (Length: 329)
Name: NF0815_low_10
Description: NF0815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0815_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 34442247 - 34442563
Alignment:
| Q |
1 |
aggaaagactcaactcttcttccataggtgcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattagaaaaattg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34442247 |
aggaaagactcaactcttcttccataggtgcatcctcggtcaatatctccaacattaattcggatgtgacctacaaaataaaaaatgattataaaaattg |
34442346 |
T |
|
| Q |
101 |
tggcgtgacattgtcactgccgttaagaggatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgt |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34442347 |
tgacgtgacattgtcactgccgttaagaggatttatccacctcataagtgcgagtcccccaaaatatacaacatgatcttcctgagtgatgtcactatgt |
34442446 |
T |
|
| Q |
201 |
cgtgttgtatgatgtgttttagaannnnnnnnnnnatgcattttagataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaa |
300 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34442447 |
cgtgttgtatgatgtgttttagaa----tttttttatgcattttcgataagtcttaagtagttttagacagtttggagatgaaaatatcaagaaaatcaa |
34442542 |
T |
|
| Q |
301 |
ggttcctgatccagaataatc |
321 |
Q |
| |
|
|||||||| ||||||| |||| |
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|
| T |
34442543 |
ggttcctggtccagaacaatc |
34442563 |
T |
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